CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig11029_at

Gene name
Homology with Arabidopsis Similar to At2g42830: SHP2 (SHATTERPROOF 2) (HF=2e-10)

Module size 6 genes

NF 0.32

%ile 43.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.33 42.6 0.94 Contig11029_at Contig11029 - - 2e-10 At2g42830 SHP2 (SHATTERPROOF 2) O.I. H.G. S.X.
0.77 90.8 0.94 Contig9944_s_at Contig9944 - - 4e+0 At2g36890 RAX2 (REGULATOR OF AXILLARY MERISTEMS 2) O.I. H.G. S.X.
0.35 45.1 0.94 HV10J10u_at HV10J10u - - 2e-4 At2g24200 cytosol aminopeptidase O.I. H.G. S.X.
0.33 42.6 0.94 Contig5399_at Contig5399 - - 4e-27 At2g20860 LIP1 (LIPOIC ACID SYNTHASE 1) O.I. H.G. S.X.
0.27 32.1 0.94 Contig10432_at Contig10432 - - 2e-29 At3g60750 transketolase, putative O.I. H.G. S.X.
0.18 18.2 0.93 Contig12269_s_at Contig12269 - - 8e-10 At4g30850 HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.8 98.6 GSM372957 genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.2 98.0 GSM261067 Xantha s-46 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.1 97.3 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.1 97.3 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.9 97.1 GSM261071 Albina f-17 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1 96.2 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.0 96.0 GSM261061 Xantha b-12 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3 94.6 GSM261077 Albina e-16 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1 94.1 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
2.8 93.1 GSM372968 genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the grape gene, 1621836_at, orthologous to the query gene, Contig11029_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.65 85.0 1621836_at At2g42830 MADS-box protein 5 - 2e-9 At4g09960 STK (SEEDSTICK) O.I. H.G. S.X.
0.92 99.0 1610616_at At2g42830 hypothetical protein LOC100260773 /// hypothetical protein LOC100252365 - 5e-3 At1g62710 BETA-VPE (BETA VACUOLAR PROCESSING ENZYME) O.I. H.G. S.X.
0.90 95.6 1611173_at At2g42830 hypothetical protein LOC100258969 - 1e+0 At3g25080 unknown protein O.I. H.G. S.X.
0.90 95.6 1614697_at At2g42830 hypothetical protein LOC100255962 - 5e+0 At5g07550 GRP19 (GLYCINE-RICH PROTEIN 19) O.I. H.G. S.X.
0.88 95.4 1614771_at At2g42830 hypothetical protein LOC100242179 - 1e+0 At5g62200 embryo-specific protein-related O.I. H.G. S.X.
0.87 95.2 1615925_at At2g42830 hypothetical protein LOC100260124 - 3e-4 At4g10020 AtHSD5 (hydroxysteroid dehydrogenase 5) O.I. H.G. S.X.
0.85 94.9 1621346_at At2g42830 hypothetical protein LOC100263108 - 8e-2 At1g74440 unknown protein O.I. H.G. S.X.
0.85 94.9 1613191_at At2g42830 hypothetical protein LOC100254511 - 8e-2 At3g20850 proline-rich family protein O.I. H.G. S.X.
0.83 94.6 1620307_at At2g42830 hypothetical protein LOC100264814 - 2e-10 At2g33380 RD20 (RESPONSIVE TO DESSICATION 20) O.I. H.G. S.X.
0.81 93.7 1617980_at At2g42830 - - 8e-1 At5g66800 unknown protein O.I. H.G. S.X.
0.80 93.6 1620137_s_at At2g42830 hypothetical protein LOC100260466 - 3e+0 At3g20510 unknown protein O.I. H.G. S.X.
0.77 92.3 1618312_at At2g42830 hypothetical protein LOC100240958 - 8e-2 At1g22540 proton-dependent oligopeptide transport (POT) family protein O.I. H.G. S.X.
0.76 91.5 1619031_at At2g42830 hypothetical protein LOC100266074 - 5e-10 At3g63140 CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA) O.I. H.G. S.X.
0.76 91.5 1613161_at At2g42830 hypothetical protein LOC100257921 - 3e+0 At4g18860 unknown protein O.I. H.G. S.X.
0.72 89.7 1621723_at At2g42830 hypothetical protein LOC100248744 - 6e-14 At1g61110 anac025 (Arabidopsis NAC domain containing protein 25) O.I. H.G. S.X.
0.72 89.7 1622225_at At2g42830 hypothetical protein LOC100249321 - 3e+0 At3g07425 unknown protein O.I. H.G. S.X.
0.65 85.0 1619180_at At2g42830 hypothetical protein LOC100252897 - 2e-14 At1g17810 BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) O.I. H.G. S.X.
0.63 84.3 1621786_at At2g42830 hypothetical protein LOC100249921 - 2e-3 At5g67490 unknown protein O.I. H.G. S.X.
0.56 79.4 1619481_at At2g42830 hypothetical protein LOC100256947 - 2e-2 At4g25140 OLEO1 (OLEOSIN 1) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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