Co-expression analysis

Gene ID Contig11004_at
Gene name
Homology with ArabidopsisSimilar to At3g07010: pectate lyase family protein (HF=3e-22)
Module size 8 genes
NF 0.59
%ile 80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.10.90Contig11004_atContig11004--3e-22At3g07010pectate lyase family proteinO.I.H.G.S.X.
0.7589.50.91Contig11955_atContig11955--4e-1At3g15630unknown proteinO.I.H.G.S.X.
0.7086.00.91Contig19483_atContig19483--8e-39At1g07170-O.I.H.G.S.X.
0.6784.70.90Contig25763_atContig25763--3e-1At3g55280RPL23AB (RIBOSOMAL PROTEIN L23AB)O.I.H.G.S.X.
0.5369.70.91Contig657_s_atContig657--1e-49At1g09200histone H3O.I.H.G.S.X.
0.4356.40.92Contig10319_atContig10319--2e-3At3g29170unknown proteinO.I.H.G.S.X.
0.3545.10.92Contig22781_atContig22781--1e+1At5g53895unknown proteinO.I.H.G.S.X.
0.2528.90.93Contig10816_atContig10816--2e+0At3g09160RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.999.2GSM419973Lemma_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
10.999.2GSM440958Control lemma_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
7.198.4GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
5.497.5GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.397.4GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.097.2GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
4.596.7GSM419974Lemma_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.596.7GSM440959Control lemma_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.296.3GSM130799control, biological rep1GSE5605Expression data from barley under salinity stress and JA treatmentLink to GEO
4.196.2GSM130802salinity stress, biological rep2GSE5605Expression data from barley under salinity stress and JA treatmentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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