Co-expression analysis

Gene ID	Contig10972_at
Gene name
Homology with Arabidopsis	Similar to At1g32500: ATNAP6 (NON-INTRINSIC ABC PROTEIN 6) (HF=1e-5)
Module size	6 genes
NF	0.55
%ile	76.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.0	0.91	Contig10972_at	Contig10972	-	-	1e-5	At1g32500	ATNAP6 (NON-INTRINSIC ABC PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.90	Contig16253_at	Contig16253	-	-	7e+0	At5g48515	-	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.90	Contig11287_s_at	Contig11287	-	-	1e+0	At5g15960	KIN1	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.92	Contig9975_at	Contig9975	-	-	1e+0	At1g27435	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.91	Contig20219_at	Contig20219	-	-	1e-2	At3g24770	CLE41 (CLAVATA3/ESR-RELATED 41)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.92	Contig11995_at	Contig11995	-	-	4e-1	At2g29050	ATRBL1 (Arabidopsis thaliana Rhomboid-like 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.1	99.1	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.1	98.0	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
6.1	98.0	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.9	97.9	GSM419980	Awn_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.9	97.9	GSM440971	Control awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.7	97.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.4	97.5	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.4	97.5	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.3	97.4	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.9	97.1	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage