Co-expression analysis

Gene ID Contig10962_at
Gene name
Homology with ArabidopsisSimilar to At4g27657: unknown protein (HF=1e+0)
Module size 12 genes
NF 0.39
%ile 53.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8594.50.95Contig10962_atContig10962--1e+0At4g27657unknown proteinO.I.H.G.S.X.
0.5674.30.96Contig97_atContig97--2e-8At3g16640TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)O.I.H.G.S.X.
0.4053.10.96Contig8059_atContig8059--8e-18At1g08720EDR1 (ENHANCED DISEASE RESISTANCE 1)O.I.H.G.S.X.
0.3849.50.97Contig8695_atContig8695--3e+0At3g28140calmodulin-binding proteinO.I.H.G.S.X.
0.3647.10.96Contig23564_atContig23564--1e+0At1g09932phosphoglycerate/bisphosphoglycerate mutase-relatedO.I.H.G.S.X.
0.3647.10.97Contig10840_atContig10840--4e-6At5g50780ATP bindingO.I.H.G.S.X.
0.3240.30.96Contig15747_atContig15747--8e-13At3g21640TWD1 (TWISTED DWARF 1)O.I.H.G.S.X.
0.3037.00.96Contig13261_atContig13261--4e-5At4g13730RabGAP/TBC domain-containing proteinO.I.H.G.S.X.
0.2935.50.96Contig8925_atContig8925--3e+0At5g66060iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donorsO.I.H.G.S.X.
0.2835.50.96Contig9554_s_atContig9554--8e-8At4g01560MEE49 (maternal effect embryo arrest 49)O.I.H.G.S.X.
0.2427.20.96Contig6082_atContig6082--2e+0At3g52760integral membrane Yip1 family proteinO.I.H.G.S.X.
0.2326.10.97Contig26395_atContig26395--5e+0At5g07460PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.795.5GSM398267HS41-1_3d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.695.3GSM282024Malting_day4_Merit_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.394.6GSM282022Malting_day4_Merit_rep4GSE11200Expression data from malting barley seedsLink to GEO
3.294.3GSM398255Martin_3d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.294.3GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM419972Lemma_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
3.194.1GSM440957Control lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.093.8GSM419975Palea_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
3.093.8GSM440963Control palea_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.093.8GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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