Co-expression analysis

Gene ID	Contig10945_at
Gene name
Homology with Arabidopsis	Similar to At5g24110: WRKY30 (HF=3e+0)
Module size	6 genes
NF	0.51
%ile	70.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	0.96	Contig10945_at	Contig10945	-	-	3e+0	At5g24110	WRKY30	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig11477_at	Contig11477	-	-	8e-5	At1g79040	PSBR (photosystem II subunit R)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.97	Contig2343_s_at	Contig2343	-	-	1e+0	At5g26010	catalytic/ protein serine/threonine phosphatase	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.96	Contig7360_at	Contig7360	-	-	3e+0	At4g19620	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.97	Contig624_at	Contig624	-	-	3e-3	At2g31390	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig1512_at	Contig1512	-	-	0	At5g12250	TUB6 (BETA-6 TUBULIN)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	98.1	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.9	97.1	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.4	96.6	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.8	95.7	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.3	94.6	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM372968	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the maize gene, Zm.6651.1.A1_at, orthologous to the query gene, Contig10945_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	99.3	Zm.6651.1.A1_at	At5g24110	-	-	5e+0	At4g13170	60S ribosomal protein L13A (RPL13aC)	O.I.	H.G.	S.X.	Please select
0.62	79.8	Zm.665.1.S1_at	At5g24110	alpha expansin1	-	7e-13	At2g37640	EXP3	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.5014.1.A1_at	At5g24110	hypothetical protein LOC100280338	-	3e-40	At1g05570	CALS1 (CALLOSE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.983.1.S1_at	At5g24110	transcription factor BTF3	-	7e-28	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.38	44.2	ZmAffx.474.1.S1_at	At5g24110	-	-	8e+0	Atcg00440	-	O.I.	H.G.	S.X.	Please select
0.34	37.2	Zm.10431.1.S1_at	At5g24110	-	-	1e+1	At5g01300	phosphatidylethanolamine-binding family protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.6580.2.A1_x_at	At5g24110	succinyl-CoA ligase beta-chain	-	4e-22	At2g20420	succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.12998.1.S1_at	At5g24110	hypothetical protein LOC100278751	-	6e-1	At3g11820	SYP121 (SYNTAXIN OF PLANTS 121)	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.16911.1.A1_at	At5g24110	-	-	3e-11	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.2764.1.S1_at	At5g24110	-	-	5e+0	At3g22950	ATARFC1 (ADP-ribosylation factor C1)	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.6480.2.S1_at	At5g24110	-	-	1e-11	At5g64200	ATSC35	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.2765.1.A1_at	At5g24110	hypothetical protein LOC100280164	-	2e-4	At2g05900	SDG11 (SET DOMAIN-CONTAINING PROTEIN 11)	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.4111.1.A1_at	At5g24110	hypothetical protein LOC100272476	-	5e-5	At5g03880	electron carrier	O.I.	H.G.	S.X.	Please select
0.21	15.5	Zm.9111.1.A1_a_at	At5g24110	-	-	4e-1	At4g27270	quinone reductase family protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	Zm.18678.1.A1_a_at	At5g24110	hypothetical protein LOC100193301	-	2e-8	At5g65510	AIL7 (AINTEGUMENTA-like 7)	O.I.	H.G.	S.X.	Please select
0.21	15.5	Zm.11595.1.A1_at	At5g24110	hypothetical protein LOC100194210	-	4e+0	At3g28500	60S acidic ribosomal protein P2 (RPP2C)	O.I.	H.G.	S.X.	Please select
0.21	15.5	Zm.13412.1.S1_at	At5g24110	-	-	2e-7	At2g36230	APG10 (ALBINO AND PALE GREEN 10)	O.I.	H.G.	S.X.	Please select
0.13	6.8	Zm.9879.2.S1_at	At5g24110	vignain	-	5e-5	At4g35350	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	O.I.	H.G.	S.X.	Please select
0.13	6.8	Zm.1956.1.S1_at	At5g24110	domain of unknown function DUF614 containing protein	-	2e-7	At1g63830	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.10	4.6	Zm.3497.1.A1_at	At5g24110	hypothetical protein LOC100272844	-	7e-31	At4g31870	ATGPX7 (glutathione peroxidase 7)	O.I.	H.G.	S.X.	Please select
0.08	3.4	Zm.2724.1.S1_at	At5g24110	hypothetical protein LOC100193244	-	3e-13	At3g22960	PKP-ALPHA	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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