Co-expression analysis

Gene ID Contig10945_at
Gene name
Homology with ArabidopsisSimilar to At5g24110: WRKY30 (HF=3e+0)
Module size 6 genes
NF 0.51
%ile 70.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5369.70.96Contig10945_atContig10945--3e+0At5g24110WRKY30O.I.H.G.S.X.
0.6178.70.96Contig11477_atContig11477--8e-5At1g79040PSBR (photosystem II subunit R)O.I.H.G.S.X.
0.5774.90.97Contig2343_s_atContig2343--1e+0At5g26010catalytic/ protein serine/threonine phosphataseO.I.H.G.S.X.
0.5674.30.96Contig7360_atContig7360--3e+0At4g19620unknown proteinO.I.H.G.S.X.
0.3647.10.97Contig624_atContig624--3e-3At2g31390pfkB-type carbohydrate kinase family proteinO.I.H.G.S.X.
0.3138.60.96Contig1512_atContig1512--0At5g12250TUB6 (BETA-6 TUBULIN)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.498.1GSM440972Stressed awn_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.997.1GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM440973Stressed awn_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.496.6GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM440974Stressed awn_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.895.7GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.895.7GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
3.394.6GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM372968genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.3543.1.A1_at, orthologous to the query gene, Contig10945_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.2Ta.3543.1.A1_atAt5g24110--3e-1At2g17785zinc-binding protein-relatedO.I.H.G.S.X.
0.5072.4Ta.27940.1.A1_s_atAt5g24110--1e+0At1g01380ETC1 (ENHANCER OF TRY AND CPC 1)O.I.H.G.S.X.
0.4464.5TaAffx.12303.1.S1_atAt5g24110--1e-1At4g37240unknown proteinO.I.H.G.S.X.
0.4464.5Ta.6587.2.S1_x_atAt5g24110--3e-1At2g40100LHCB4.3 (light harvesting complex PSII)O.I.H.G.S.X.
0.4362.2Ta.6587.2.S1_a_atAt5g24110--3e-1At2g40100LHCB4.3 (light harvesting complex PSII)O.I.H.G.S.X.
0.4058.4TaAffx.13383.1.A1_atAt5g24110--8e-1At1g17800plastocyanin-like domain-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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