Co-expression analysis

Gene ID	Contig10945_at
Gene name
Homology with Arabidopsis	Similar to At5g24110: WRKY30 (HF=3e+0)
Module size	6 genes
NF	0.51
%ile	70.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	0.96	Contig10945_at	Contig10945	-	-	3e+0	At5g24110	WRKY30	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig11477_at	Contig11477	-	-	8e-5	At1g79040	PSBR (photosystem II subunit R)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.97	Contig2343_s_at	Contig2343	-	-	1e+0	At5g26010	catalytic/ protein serine/threonine phosphatase	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.96	Contig7360_at	Contig7360	-	-	3e+0	At4g19620	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.97	Contig624_at	Contig624	-	-	3e-3	At2g31390	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig1512_at	Contig1512	-	-	0	At5g12250	TUB6 (BETA-6 TUBULIN)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	98.1	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.9	97.1	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.4	96.6	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.8	95.7	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.3	94.6	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM372968	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.151541.1.A1_at, orthologous to the query gene, Contig10945_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.36	61.6	PtpAffx.151541.1.A1_at	At5g24110	-	-	8e+0	At4g37925	NDH-M (subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.202727.1.S1_at	At5g24110	-	-	6e-4	At3g04350	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.211211.1.S1_at	At5g24110	hypothetical protein	-	1e+0	At1g18380	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.32679.1.S1_at	At5g24110	-	-	1e+1	At5g67110	ALC (ALCATRAZ)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	PtpAffx.223405.1.S1_at	At5g24110	hypothetical protein	-	5e-25	At5g35530	40S ribosomal protein S3 (RPS3C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.225643.1.S1_x_at	At5g24110	hypothetical protein	-	1e-2	At1g07980	NF-YC10 (NUCLEAR FACTOR Y, SUBUNIT C10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.225287.1.S1_x_at	At5g24110	hypothetical protein	-	4e-1	At5g11130	exostosin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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