CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig10922_at

Gene name
Homology with Arabidopsis Similar to At3g48380: - (HF=3e-16)

Module size 7 genes

NF 0.40

%ile 55.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 75.8 0.94 Contig10922_at Contig10922 - - 3e-16 At3g48380 - O.I. H.G. S.X.
0.60 77.3 0.95 Contig1356_s_at Contig1356 - - 4e+0 At4g02450 glycine-rich protein O.I. H.G. S.X.
0.46 61.0 0.94 Contig11557_at Contig11557 - - 2e+0 At5g27860 unknown protein O.I. H.G. S.X.
0.46 61.0 0.95 Contig6937_at Contig6937 - - 2e+0 At1g45145 ATTRX5 O.I. H.G. S.X.
0.44 58.9 0.95 Contig1470_s_at Contig1470 - - 6e-3 At4g00610 DNA-binding storekeeper protein-related O.I. H.G. S.X.
0.31 38.6 0.95 Contig7023_at Contig7023 - - 3e+0 At5g65390 AGP7 O.I. H.G. S.X.
0.13 11.6 0.96 Contig24576_at Contig24576 - - 1e+0 At5g28295 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.59	75.8	0.94	Contig10922_at	Contig10922	-	-	3e-16	At3g48380	-	O.I.	H.G.	S.X.
0.60	77.3	0.95	Contig1356_s_at	Contig1356	-	-	4e+0	At4g02450	glycine-rich protein	O.I.	H.G.	S.X.
0.46	61.0	0.94	Contig11557_at	Contig11557	-	-	2e+0	At5g27860	unknown protein	O.I.	H.G.	S.X.
0.46	61.0	0.95	Contig6937_at	Contig6937	-	-	2e+0	At1g45145	ATTRX5	O.I.	H.G.	S.X.
0.44	58.9	0.95	Contig1470_s_at	Contig1470	-	-	6e-3	At4g00610	DNA-binding storekeeper protein-related	O.I.	H.G.	S.X.
0.31	38.6	0.95	Contig7023_at	Contig7023	-	-	3e+0	At5g65390	AGP7	O.I.	H.G.	S.X.
0.13	11.6	0.96	Contig24576_at	Contig24576	-	-	1e+0	At5g28295	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.8 97.0 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
4.5 96.7 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
4.2 96.3 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
4.0 96.0 GSM282039 Malting_day4_Morex_rep2 GSE11200 Expression data from malting barley seeds
3.9 95.8 GSM398263 HS41-1_0d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.8 95.7 GSM372990 genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7 95.5 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.5 95.1 GSM71142 OWB-R stress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression
3.4 94.8 GSM282021 Malting_day4_Legacy_rep 2 GSE11200 Expression data from malting barley seeds
3.0 93.8 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
4.8	97.0	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.2	96.3	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
4.0	96.0	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.9	95.8	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.8	95.7	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.5	95.1	GSM71142	OWB-R stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.4	94.8	GSM282021	Malting_day4_Legacy_rep 2	GSE11200	Expression data from malting barley seeds
3.0	93.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.86887.1.S1_at, orthologous to the query gene, Contig10922_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.84 93.6 TaAffx.86887.1.S1_at At3g48380 - - 2e-2 At4g09270 unknown protein O.I. H.G. S.X.
0.55 76.8 Ta.6441.2.S1_at At3g48380 - - 5e-5 At3g16270 - O.I. H.G. S.X.
0.53 74.9 TaAffx.11919.3.S1_s_at At3g48380 - - 5e-30 At3g58500 PP2A-3 (PROTEIN PHOSPHATASE 2A-3) O.I. H.G. S.X.
0.50 72.4 TaAffx.86837.1.S1_at At3g48380 - - 2e+0 At1g19320 pathogenesis-related thaumatin family protein O.I. H.G. S.X.
0.50 72.4 TaAffx.37044.1.S1_at At3g48380 - - 3e-1 At5g06060 tropinone reductase, putative / tropine dehydrogenase, putative O.I. H.G. S.X.
0.50 72.4 TaAffx.97428.1.S1_at At3g48380 - - 2e+0 At1g55140 RNA binding / ribonuclease III O.I. H.G. S.X.
0.48 69.0 TaAffx.59289.1.S1_at At3g48380 - - 1e-15 At5g19330 armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein O.I. H.G. S.X.
0.46 66.8 Ta.10633.2.S1_a_at At3g48380 - - 2e-1 At1g01020 ARV1 O.I. H.G. S.X.
0.46 66.8 TaAffx.114026.1.S1_s_at At3g48380 - - 4e-42 At1g04810 26S proteasome regulatory subunit, putative O.I. H.G. S.X.
0.43 62.2 TaAffx.129139.2.S1_x_at At3g48380 - - 2e-3 At1g08370 DCP1 (decapping 1) O.I. H.G. S.X.
0.41 59.6 Ta.19822.3.S1_at At3g48380 - - 4e-1 At1g10430 PP2A-2 O.I. H.G. S.X.
0.39 56.1 TaAffx.8275.1.S1_at At3g48380 - - 2e-3 At1g21080 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.39 56.1 TaAffx.92769.1.S1_at At3g48380 - - 5e-3 At5g04420 kelch repeat-containing protein O.I. H.G. S.X.
0.37 53.0 Ta.19822.3.S1_x_at At3g48380 - - 4e-1 At1g10430 PP2A-2 O.I. H.G. S.X.
0.32 44.4 Ta.13594.3.S1_a_at At3g48380 - - 1e+0 At1g09630 ATRAB11C (ARABIDOPSIS RAB GTPASE 11C) O.I. H.G. S.X.
0.28 39.2 Ta.10633.2.S1_x_at At3g48380 - - 2e-1 At1g01020 ARV1 O.I. H.G. S.X.
0.25 32.1 TaAffx.106894.1.S1_at At3g48380 - - 2e+0 At5g64180 unknown protein O.I. H.G. S.X.
0.24 30.3 Ta.7027.3.S1_at At3g48380 - - 1e+0 At5g37770 TCH2 (TOUCH 2) O.I. H.G. S.X.
0.19 22.4 Ta.6566.2.S1_at At3g48380 - - 1e-18 At4g29040 RPT2a (regulatory particle AAA-ATPase 2a) O.I. H.G. S.X.
0.16 18.2 TaAffx.128478.2.S1_s_at At3g48380 - - 8e-11 At5g32470 - O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.84	93.6	TaAffx.86887.1.S1_at	At3g48380	-	-	2e-2	At4g09270	unknown protein	O.I.	H.G.	S.X.
0.55	76.8	Ta.6441.2.S1_at	At3g48380	-	-	5e-5	At3g16270	-	O.I.	H.G.	S.X.
0.53	74.9	TaAffx.11919.3.S1_s_at	At3g48380	-	-	5e-30	At3g58500	PP2A-3 (PROTEIN PHOSPHATASE 2A-3)	O.I.	H.G.	S.X.
0.50	72.4	TaAffx.86837.1.S1_at	At3g48380	-	-	2e+0	At1g19320	pathogenesis-related thaumatin family protein	O.I.	H.G.	S.X.
0.50	72.4	TaAffx.37044.1.S1_at	At3g48380	-	-	3e-1	At5g06060	tropinone reductase, putative / tropine dehydrogenase, putative	O.I.	H.G.	S.X.
0.50	72.4	TaAffx.97428.1.S1_at	At3g48380	-	-	2e+0	At1g55140	RNA binding / ribonuclease III	O.I.	H.G.	S.X.
0.48	69.0	TaAffx.59289.1.S1_at	At3g48380	-	-	1e-15	At5g19330	armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein	O.I.	H.G.	S.X.
0.46	66.8	Ta.10633.2.S1_a_at	At3g48380	-	-	2e-1	At1g01020	ARV1	O.I.	H.G.	S.X.
0.46	66.8	TaAffx.114026.1.S1_s_at	At3g48380	-	-	4e-42	At1g04810	26S proteasome regulatory subunit, putative	O.I.	H.G.	S.X.
0.43	62.2	TaAffx.129139.2.S1_x_at	At3g48380	-	-	2e-3	At1g08370	DCP1 (decapping 1)	O.I.	H.G.	S.X.
0.41	59.6	Ta.19822.3.S1_at	At3g48380	-	-	4e-1	At1g10430	PP2A-2	O.I.	H.G.	S.X.
0.39	56.1	TaAffx.8275.1.S1_at	At3g48380	-	-	2e-3	At1g21080	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.39	56.1	TaAffx.92769.1.S1_at	At3g48380	-	-	5e-3	At5g04420	kelch repeat-containing protein	O.I.	H.G.	S.X.
0.37	53.0	Ta.19822.3.S1_x_at	At3g48380	-	-	4e-1	At1g10430	PP2A-2	O.I.	H.G.	S.X.
0.32	44.4	Ta.13594.3.S1_a_at	At3g48380	-	-	1e+0	At1g09630	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C)	O.I.	H.G.	S.X.
0.28	39.2	Ta.10633.2.S1_x_at	At3g48380	-	-	2e-1	At1g01020	ARV1	O.I.	H.G.	S.X.
0.25	32.1	TaAffx.106894.1.S1_at	At3g48380	-	-	2e+0	At5g64180	unknown protein	O.I.	H.G.	S.X.
0.24	30.3	Ta.7027.3.S1_at	At3g48380	-	-	1e+0	At5g37770	TCH2 (TOUCH 2)	O.I.	H.G.	S.X.
0.19	22.4	Ta.6566.2.S1_at	At3g48380	-	-	1e-18	At4g29040	RPT2a (regulatory particle AAA-ATPase 2a)	O.I.	H.G.	S.X.
0.16	18.2	TaAffx.128478.2.S1_s_at	At3g48380	-	-	8e-11	At5g32470	-	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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Gene ID	Contig10922_at
Gene name
Homology with Arabidopsis	Similar to At3g48380: - (HF=3e-16)
Module size	7 genes
NF	0.40
%ile	55.2

Co-expression analysis

Gene ID Contig10922_at Gene name Homology with ArabidopsisSimilar to At3g48380: - (HF=3e-16) Module size 7 genes NF 0.40 %ile 55.2

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaVitis_viniferaZea_mays

Gene ID Contig10922_at

Gene name
Homology with Arabidopsis Similar to At3g48380: - (HF=3e-16)

Module size 7 genes

NF 0.40

%ile 55.2

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays