Co-expression analysis

Gene ID	Contig10922_at
Gene name
Homology with Arabidopsis	Similar to At3g48380: - (HF=3e-16)
Module size	7 genes
NF	0.40
%ile	55.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	75.8	0.94	Contig10922_at	Contig10922	-	-	3e-16	At3g48380	-	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.95	Contig1356_s_at	Contig1356	-	-	4e+0	At4g02450	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.94	Contig11557_at	Contig11557	-	-	2e+0	At5g27860	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.95	Contig6937_at	Contig6937	-	-	2e+0	At1g45145	ATTRX5	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig1470_s_at	Contig1470	-	-	6e-3	At4g00610	DNA-binding storekeeper protein-related	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig7023_at	Contig7023	-	-	3e+0	At5g65390	AGP7	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.96	Contig24576_at	Contig24576	-	-	1e+0	At5g28295	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.0	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.2	96.3	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
4.0	96.0	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.9	95.8	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.8	95.7	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.5	95.1	GSM71142	OWB-R stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.4	94.8	GSM282021	Malting_day4_Legacy_rep 2	GSE11200	Expression data from malting barley seeds
3.0	93.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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