CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig10884_at

Gene name
Homology with Arabidopsis Similar to At5g17510: unknown protein (HF=3e-3)

Module size 6 genes

NF 0.28

%ile 36.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.81 Contig10884_at Contig10884 - - 3e-3 At5g17510 unknown protein O.I. H.G. S.X.
0.46 61.0 0.81 Contig26234_at Contig26234 - - 1e-3 At2g35360 ubiquitin family protein O.I. H.G. S.X.
0.40 53.1 0.81 HS05I21u_s_at HS05I21u - - 4e+0 At3g01322 - O.I. H.G. S.X.
0.40 53.1 0.85 Contig3870_at Contig3870 - - 4e-44 At5g20570 RBX1 (RING-BOX 1) O.I. H.G. S.X.
0.33 42.6 0.83 Contig6585_at Contig6585 - - 1e-8 At5g58620 zinc finger (CCCH-type) family protein O.I. H.G. S.X.
0.08 6.5 0.81 Contig3295_at Contig3295 - - 2e-1 At3g55040 GSTL2 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.82	Contig9899_at	Contig9899	-	-	4e-1	At1g65430	zinc finger protein-related	O.I.	H.G.	S.X.
0.50	66.9	0.89	Contig7691_at	Contig7691	pathogen induced protein 2-4	-	4e-2	At2g21620	RD2	O.I.	H.G.	S.X.
0.44	58.9	0.84	Contig15168_at	Contig15168	-	-	1e-1	At1g11240	unknown protein	O.I.	H.G.	S.X.
0.44	58.9	0.85	Contig1516_s_at	Contig1516	-	-	3e-72	At5g62700	TUB3	O.I.	H.G.	S.X.
0.44	58.9	0.86	Contig7389_at	Contig7389	-	-	1e-2	At3g26180	CYP71B20	O.I.	H.G.	S.X.
0.38	49.5	0.77	Contig6936_at	Contig6936	-	-	2e+0	At4g22950	AGL19 (AGAMOUS-LIKE 19)	O.I.	H.G.	S.X.
0.36	47.1	0.85	Contig13485_s_at	Contig13485	-	-	4e+0	At5g35631	unknown protein	O.I.	H.G.	S.X.
0.27	32.1	0.74	HS05I21u_at	HS05I21u	-	-	4e+0	At3g01322	-	O.I.	H.G.	S.X.
0.26	30.4	0.66	Contig16826_at	Contig16826	-	-	4e+0	At2g30660	3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative	O.I.	H.G.	S.X.
0.25	28.9	0.80	Contig2900_at	Contig2900	-	-	7e-1	At4g36540	BEE2 (BR Enhanced Expression 2)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.6 99.6 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
6.5 98.2 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
6.3 98.1 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.9 97.9 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.7 97.7 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.4 97.5 GSM282023 Malting_day4_Merit_rep3 GSE11200 Expression data from malting barley seeds
5.3 97.4 GSM238416 Endosperm 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.3 97.4 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.0 97.2 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.9 97.1 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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