Co-expression analysis

Gene ID	Contig10884_at
Gene name
Homology with Arabidopsis	Similar to At5g17510: unknown protein (HF=3e-3)
Module size	6 genes
NF	0.28
%ile	36.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.81	Contig10884_at	Contig10884	-	-	3e-3	At5g17510	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.81	Contig26234_at	Contig26234	-	-	1e-3	At2g35360	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.81	HS05I21u_s_at	HS05I21u	-	-	4e+0	At3g01322	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.85	Contig3870_at	Contig3870	-	-	4e-44	At5g20570	RBX1 (RING-BOX 1)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.83	Contig6585_at	Contig6585	-	-	1e-8	At5g58620	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.81	Contig3295_at	Contig3295	-	-	2e-1	At3g55040	GSTL2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.6	99.6	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
6.5	98.2	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
6.3	98.1	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM282023	Malting_day4_Merit_rep3	GSE11200	Expression data from malting barley seeds
5.3	97.4	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

A co-expression module including the maize gene, Zm.17666.1.A1_at, orthologous to the query gene, Contig10884_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	81.7	Zm.17666.1.A1_at	At5g17510	hypothetical protein LOC100272483	-	2e+0	At5g25460	unknown protein	O.I.	H.G.	S.X.	Please select
0.64	81.7	Zm.227.1.S2_x_at	At5g17510	Ferredoxin-sulfite reductase precursor	-	2e-12	At5g04590	SIR	O.I.	H.G.	S.X.	Please select
0.56	74.4	Zm.16942.1.A1_at	At5g17510	-	-	8e+0	At1g53610	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	ZmAffx.534.1.S1_at	At5g17510	-	-	3e+0	At3g50651	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.15714.1.S1_a_at	At5g17510	transglutaminase	-	7e-2	At4g33660	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.14044.1.A1_at	At5g17510	hypothetical protein LOC100275866	-	1e+0	At2g34120	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.16530.2.S1_a_at	At5g17510	-	-	1e-69	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.36	41.3	ZmAffx.991.1.A1_at	At5g17510	-	-	1e+1	At5g54300	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.17270.6.A1_at	At5g17510	hypothetical protein LOC100273578	-	2e-1	At4g05080	F-box family protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	ZmAffx.213.1.S1_at	At5g17510	-	-	3e+0	At2g32050	cell cycle control protein-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage