Co-expression analysis

Gene ID	Contig10884_at
Gene name
Homology with Arabidopsis	Similar to At5g17510: unknown protein (HF=3e-3)
Module size	6 genes
NF	0.28
%ile	36.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.81	Contig10884_at	Contig10884	-	-	3e-3	At5g17510	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.81	Contig26234_at	Contig26234	-	-	1e-3	At2g35360	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.81	HS05I21u_s_at	HS05I21u	-	-	4e+0	At3g01322	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.85	Contig3870_at	Contig3870	-	-	4e-44	At5g20570	RBX1 (RING-BOX 1)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.83	Contig6585_at	Contig6585	-	-	1e-8	At5g58620	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.81	Contig3295_at	Contig3295	-	-	2e-1	At3g55040	GSTL2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.6	99.6	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
6.5	98.2	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
6.3	98.1	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM282023	Malting_day4_Merit_rep3	GSE11200	Expression data from malting barley seeds
5.3	97.4	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

A co-expression module including the grape gene, 1619831_a_at, orthologous to the query gene, Contig10884_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	95.6	1619831_a_at	At5g17510	hypothetical protein LOC100252479	-	6e-10	At4g32460	-	O.I.	H.G.	S.X.	Please select
0.76	91.5	1620496_at	At5g17510	hypothetical protein LOC100257468	-	3e-7	At4g34480	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	O.I.	H.G.	S.X.	Please select
0.53	75.2	1616183_at	At5g17510	hypothetical protein LOC100257468	-	3e-1	At2g28190	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	O.I.	H.G.	S.X.	Please select
0.52	73.9	1617750_at	At5g17510	-	-	3e-20	At5g35180	phosphoinositide binding	O.I.	H.G.	S.X.	Please select
0.47	67.7	1607101_s_at	At5g17510	hypothetical protein LOC100245611	-	2e-67	At3g11830	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.46	66.5	1614987_at	At5g17510	hypothetical protein LOC100241685	-	1e-15	At1g51340	MATE efflux family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1612181_at	At5g17510	hypothetical protein LOC100241990	-	7e-6	At4g14100	transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select
0.44	64.1	1620674_at	At5g17510	-	-	2e-5	At5g45428	CPuORF24 (Conserved peptide upstream open reading frame 24)	O.I.	H.G.	S.X.	Please select
0.43	61.5	1609680_at	At5g17510	hypothetical protein LOC100263250	-	8e-37	At1g06820	CRTISO (CAROTENOID ISOMERASE)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1614416_at	At5g17510	hypothetical protein LOC100244960	-	8e-6	At5g58900	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.39	54.9	1620480_at	At5g17510	hypothetical protein LOC100266309	-	4e-1	At3g51325	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	1614297_at	At5g17510	hypothetical protein LOC100264651	-	2e-6	At4g32000	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	1621508_at	At5g17510	hypothetical protein LOC100260203	-	3e-20	At5g35180	phosphoinositide binding	O.I.	H.G.	S.X.	Please select
0.37	51.7	1606826_at	At5g17510	hypothetical protein LOC100250592	-	1e-7	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.34	46.8	1610742_at	At5g17510	similar to acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative	-	1e-20	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	O.I.	H.G.	S.X.	Please select
0.34	46.8	1610617_at	At5g17510	hypothetical protein LOC100258419	-	6e-3	At2g41475	-	O.I.	H.G.	S.X.	Please select
0.34	46.8	1607319_at	At5g17510	hypothetical protein LOC100253247	-	4e-22	At5g03540	ATEXO70A1 (exocyst subunit EXO70 family protein A1)	O.I.	H.G.	S.X.	Please select
0.33	45.7	1610862_at	At5g17510	hypothetical protein LOC100260563	-	2e+0	At3g62650	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	1613034_at	At5g17510	hypothetical protein LOC100248519	-	1e-1	At1g09870	histidine acid phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	1614834_at	At5g17510	vacuolar pyrophosphatase	-	5e-156	At1g15690	AVP1	O.I.	H.G.	S.X.	Please select
0.25	30.5	1616302_at	At5g17510	ripening-related protein-like	-	4e-11	At5g02230	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	1607131_at	At5g17510	hypothetical protein LOC100246113	-	2e+0	At2g16595	-	O.I.	H.G.	S.X.	Please select
0.22	25.6	1621516_at	At5g17510	hypothetical protein LOC100244761	-	2e-3	At2g14560	LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)	O.I.	H.G.	S.X.	Please select
0.17	18.2	1609810_at	At5g17510	hypothetical protein LOC100245397	-	3e-32	At4g08900	arginase	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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