CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig10884_at

Gene name
Homology with Arabidopsis Similar to At5g17510: unknown protein (HF=3e-3)

Module size 6 genes

NF 0.28

%ile 36.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.81 Contig10884_at Contig10884 - - 3e-3 At5g17510 unknown protein O.I. H.G. S.X.
0.46 61.0 0.81 Contig26234_at Contig26234 - - 1e-3 At2g35360 ubiquitin family protein O.I. H.G. S.X.
0.40 53.1 0.81 HS05I21u_s_at HS05I21u - - 4e+0 At3g01322 - O.I. H.G. S.X.
0.40 53.1 0.85 Contig3870_at Contig3870 - - 4e-44 At5g20570 RBX1 (RING-BOX 1) O.I. H.G. S.X.
0.33 42.6 0.83 Contig6585_at Contig6585 - - 1e-8 At5g58620 zinc finger (CCCH-type) family protein O.I. H.G. S.X.
0.08 6.5 0.81 Contig3295_at Contig3295 - - 2e-1 At3g55040 GSTL2 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.81	Contig10884_at	Contig10884	-	-	3e-3	At5g17510	unknown protein	O.I.	H.G.	S.X.
0.46	61.0	0.81	Contig26234_at	Contig26234	-	-	1e-3	At2g35360	ubiquitin family protein	O.I.	H.G.	S.X.
0.40	53.1	0.81	HS05I21u_s_at	HS05I21u	-	-	4e+0	At3g01322	-	O.I.	H.G.	S.X.
0.40	53.1	0.85	Contig3870_at	Contig3870	-	-	4e-44	At5g20570	RBX1 (RING-BOX 1)	O.I.	H.G.	S.X.
0.33	42.6	0.83	Contig6585_at	Contig6585	-	-	1e-8	At5g58620	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.
0.08	6.5	0.81	Contig3295_at	Contig3295	-	-	2e-1	At3g55040	GSTL2	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.6 99.6 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
6.5 98.2 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
6.3 98.1 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.9 97.9 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.7 97.7 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.4 97.5 GSM282023 Malting_day4_Merit_rep3 GSE11200 Expression data from malting barley seeds
5.3 97.4 GSM238416 Endosperm 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.3 97.4 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.0 97.2 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.9 97.1 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
16.6	99.6	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
6.5	98.2	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
6.3	98.1	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM282023	Malting_day4_Merit_rep3	GSE11200	Expression data from malting barley seeds
5.3	97.4	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

A co-expression module including the rice gene, Os02g0205200, orthologous to the query gene, Contig10884_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.72 89.8 Os02g0205200 At5g17510 - Protein of unknown function DUF642 family protein 5e-2 At2g15930 unknown protein O.I. H.G. S.X.
0.67 87.2 Os01g0122000 At5g17510 - TRAF-like domain containing protein 8e-1 At5g18748 unknown protein O.I. H.G. S.X.
0.65 83.8 Os07g0507500 At5g17510 - Hypothetical protein 3e-1 At2g01080 - O.I. H.G. S.X.
0.63 82.7 Os07g0438600 At5g17510 - Proteinase inhibitor I9, subtilisin propeptidedomain containing protein 4e-1 At5g41440 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.63 82.7 Os02g0753900 At5g17510 - Conserved hypothetical protein 6e-2 At5g15820 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.61 81.2 Os07g0188000 At5g17510 - Argonaute protein 3e-5 At2g27880 AGO5 (ARGONAUTE 5) O.I. H.G. S.X.
0.61 81.2 Os03g0212300 At5g17510 - Transcriptional factor B3 family protein 7e-1 At1g64370 unknown protein O.I. H.G. S.X.
0.61 81.2 Os03g0423300 At5g17510 - Stearoyl-acyl carrier protein desaturse (EC1.14.99.6) (Fragment) 1e-2 At5g16230 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative O.I. H.G. S.X.
0.59 78.0 Os08g0492000 At5g17510 - Oligopeptide transporter OPT superfamily protein 6e-21 At5g55930 OPT1 (OLIGOPEPTIDE TRANSPORTER 1) O.I. H.G. S.X.
0.57 77.0 Os08g0554100 At5g17510 - Rhamnogalacturonate lyase family protein 2e-5 At4g24430 lyase O.I. H.G. S.X.
0.55 73.7 Os05g0203800 At5g17510 - MADS box protein 4e-20 At3g58780 SHP1 (SHATTERPROOF 1) O.I. H.G. S.X.
0.55 73.7 Os08g0467300 At5g17510 - ANTH domain containing protein 1e-2 At1g25240 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related O.I. H.G. S.X.
0.55 73.7 Os08g0220400 At5g17510 - Pectinesterase family protein 2e-1 At3g11820 SYP121 (SYNTAXIN OF PLANTS 121) O.I. H.G. S.X.
0.52 69.6 Os09g0445600 At5g17510 - Conserved hypothetical protein 2e-3 At5g67490 unknown protein O.I. H.G. S.X.
0.47 62.3 Os01g0643300 At5g17510 - Efflux carrier of polar auxin transport 1e-19 At1g70940 PIN3 (PIN-FORMED 3) O.I. H.G. S.X.
0.46 60.9 Os03g0215200 At5g17510 - DL protein (Drooping leaf) 6e-7 At1g69180 CRC (CRABS CLAW) O.I. H.G. S.X.
0.38 46.9 Os05g0138000 At5g17510 - Conserved hypothetical protein 1e-3 At5g08330 TCP family transcription factor, putative O.I. H.G. S.X.
0.34 40.0 Os11g0582300 At5g17510 - Root hair defective 3 GTP-binding family protein 2e-12 At1g72960 root hair defective 3 GTP-binding (RHD3) family protein O.I. H.G. S.X.
0.33 38.8 Os08g0524800 At5g17510 - TA1 protein (Fragment) 4e-6 At4g34530 CIB1 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1) O.I. H.G. S.X.
0.29 31.1 Os07g0616200 At5g17510 - Beta-ketoacyl-ACP synthase 7e-36 At1g74960 FAB1 (FATTY ACID BIOSYNTHESIS 1) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.72	89.8	Os02g0205200	At5g17510	-	Protein of unknown function DUF642 family protein	5e-2	At2g15930	unknown protein	O.I.	H.G.	S.X.
0.67	87.2	Os01g0122000	At5g17510	-	TRAF-like domain containing protein	8e-1	At5g18748	unknown protein	O.I.	H.G.	S.X.
0.65	83.8	Os07g0507500	At5g17510	-	Hypothetical protein	3e-1	At2g01080	-	O.I.	H.G.	S.X.
0.63	82.7	Os07g0438600	At5g17510	-	Proteinase inhibitor I9, subtilisin propeptidedomain containing protein	4e-1	At5g41440	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.63	82.7	Os02g0753900	At5g17510	-	Conserved hypothetical protein	6e-2	At5g15820	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.61	81.2	Os07g0188000	At5g17510	-	Argonaute protein	3e-5	At2g27880	AGO5 (ARGONAUTE 5)	O.I.	H.G.	S.X.
0.61	81.2	Os03g0212300	At5g17510	-	Transcriptional factor B3 family protein	7e-1	At1g64370	unknown protein	O.I.	H.G.	S.X.
0.61	81.2	Os03g0423300	At5g17510	-	Stearoyl-acyl carrier protein desaturse (EC1.14.99.6) (Fragment)	1e-2	At5g16230	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	O.I.	H.G.	S.X.
0.59	78.0	Os08g0492000	At5g17510	-	Oligopeptide transporter OPT superfamily protein	6e-21	At5g55930	OPT1 (OLIGOPEPTIDE TRANSPORTER 1)	O.I.	H.G.	S.X.
0.57	77.0	Os08g0554100	At5g17510	-	Rhamnogalacturonate lyase family protein	2e-5	At4g24430	lyase	O.I.	H.G.	S.X.
0.55	73.7	Os05g0203800	At5g17510	-	MADS box protein	4e-20	At3g58780	SHP1 (SHATTERPROOF 1)	O.I.	H.G.	S.X.
0.55	73.7	Os08g0467300	At5g17510	-	ANTH domain containing protein	1e-2	At1g25240	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	O.I.	H.G.	S.X.
0.55	73.7	Os08g0220400	At5g17510	-	Pectinesterase family protein	2e-1	At3g11820	SYP121 (SYNTAXIN OF PLANTS 121)	O.I.	H.G.	S.X.
0.52	69.6	Os09g0445600	At5g17510	-	Conserved hypothetical protein	2e-3	At5g67490	unknown protein	O.I.	H.G.	S.X.
0.47	62.3	Os01g0643300	At5g17510	-	Efflux carrier of polar auxin transport	1e-19	At1g70940	PIN3 (PIN-FORMED 3)	O.I.	H.G.	S.X.
0.46	60.9	Os03g0215200	At5g17510	-	DL protein (Drooping leaf)	6e-7	At1g69180	CRC (CRABS CLAW)	O.I.	H.G.	S.X.
0.38	46.9	Os05g0138000	At5g17510	-	Conserved hypothetical protein	1e-3	At5g08330	TCP family transcription factor, putative	O.I.	H.G.	S.X.
0.34	40.0	Os11g0582300	At5g17510	-	Root hair defective 3 GTP-binding family protein	2e-12	At1g72960	root hair defective 3 GTP-binding (RHD3) family protein	O.I.	H.G.	S.X.
0.33	38.8	Os08g0524800	At5g17510	-	TA1 protein (Fragment)	4e-6	At4g34530	CIB1 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1)	O.I.	H.G.	S.X.
0.29	31.1	Os07g0616200	At5g17510	-	Beta-ketoacyl-ACP synthase	7e-36	At1g74960	FAB1 (FATTY ACID BIOSYNTHESIS 1)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Contig10884_at
Gene name
Homology with Arabidopsis	Similar to At5g17510: unknown protein (HF=3e-3)
Module size	6 genes
NF	0.28
%ile	36.5

Co-expression analysis

Gene ID Contig10884_at Gene name Homology with ArabidopsisSimilar to At5g17510: unknown protein (HF=3e-3) Module size 6 genes NF 0.28 %ile 36.5

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig10884_at

Gene name
Homology with Arabidopsis Similar to At5g17510: unknown protein (HF=3e-3)

Module size 6 genes

NF 0.28

%ile 36.5

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays