CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig10884_at

Gene name
Homology with Arabidopsis Similar to At5g17510: unknown protein (HF=3e-3)

Module size 6 genes

NF 0.28

%ile 36.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.81 Contig10884_at Contig10884 - - 3e-3 At5g17510 unknown protein O.I. H.G. S.X.
0.46 61.0 0.81 Contig26234_at Contig26234 - - 1e-3 At2g35360 ubiquitin family protein O.I. H.G. S.X.
0.40 53.1 0.81 HS05I21u_s_at HS05I21u - - 4e+0 At3g01322 - O.I. H.G. S.X.
0.40 53.1 0.85 Contig3870_at Contig3870 - - 4e-44 At5g20570 RBX1 (RING-BOX 1) O.I. H.G. S.X.
0.33 42.6 0.83 Contig6585_at Contig6585 - - 1e-8 At5g58620 zinc finger (CCCH-type) family protein O.I. H.G. S.X.
0.08 6.5 0.81 Contig3295_at Contig3295 - - 2e-1 At3g55040 GSTL2 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.6 99.6 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
6.5 98.2 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
6.3 98.1 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.9 97.9 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.7 97.7 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.4 97.5 GSM282023 Malting_day4_Merit_rep3 GSE11200 Expression data from malting barley seeds
5.3 97.4 GSM238416 Endosperm 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.3 97.4 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.0 97.2 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.9 97.1 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g17510, orthologous to the query gene, Contig10884_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.31 33.8 At5g17510 831617 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA O.I. H.G. S.X.
0.40 50.8 At2g24530 816989 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF O.I. H.G. S.X.
0.22 17.5 At2g23740 816905 nucleic acid binding / transcription factor/ zinc ion binding F:transcription factor activity, zinc ion binding, nucleic acid binding;P:chromatin modification;C:nucleus, intracellular;MOPFB O.I. H.G. S.X.
0.20 14.4 At4g24900 828592 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP O.I. H.G. S.X.
0.08 2.3 At3g54980 824663 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:unknown;POMFBA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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