Co-expression analysis

Gene ID Contig10851_at
Gene name
Homology with ArabidopsisSimilar to At5g34940: AtGUS3 (Arabidopsis thaliana glucuronidase 3) (HF=2e-1)
Module size 38 genes
NF 0.53
%ile 73.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.86Contig10851_atContig10851--2e-1At5g34940AtGUS3 (Arabidopsis thaliana glucuronidase 3)O.I.H.G.S.X.
0.6681.50.92Contig4225_atContig4225--7e-4At5g54430universal stress protein (USP) family proteinO.I.H.G.S.X.
0.6480.90.92Contig11988_atContig11988--1e-1At3g18490aspartyl protease family proteinO.I.H.G.S.X.
0.6480.90.91Contig327_s_atContig327--2e-2At2g23310ATRER1C1O.I.H.G.S.X.
0.6480.90.91Contig3967_s_atContig3967--6e-16At5g47040LON2 (LON PROTEASE 2)O.I.H.G.S.X.
0.6380.30.89Contig17015_atContig17015--7e+0At4g10465metal ion bindingO.I.H.G.S.X.
0.6178.70.92Contig7301_atContig7301--3e-1At5g26070hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.6077.30.91Contig5739_atContig5739--2e-3At5g22080DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.6077.30.93Contig4453_atContig4453--3e-3At1g14700PAP3 (PURPLE ACID PHOSPHATASE 3)O.I.H.G.S.X.
0.6077.30.92Contig3480_atContig3480--4e-1At5g16660unknown proteinO.I.H.G.S.X.
0.5975.80.91Contig6784_atContig6784--4e-22At2g26460RED family proteinO.I.H.G.S.X.
0.5975.80.93Contig7120_atContig7120--4e-18At1g55880pyridoxal-5'-phosphate-dependent enzyme, beta family proteinO.I.H.G.S.X.
0.5874.90.88Contig17671_atContig17671--2e+0At4g33130-O.I.H.G.S.X.
0.5774.90.92Contig4455_atContig4455--5e-1At5g05370ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putativeO.I.H.G.S.X.
0.5774.90.91Contig5756_atContig5756--2e-12At2g29530mitochondrial import inner membrane translocase (TIM10)O.I.H.G.S.X.
0.5572.00.90Contig11716_atContig11716--6e-14At2g25480-O.I.H.G.S.X.
0.5470.30.92Contig10368_atContig10368--4e-1At1g36940unknown proteinO.I.H.G.S.X.
0.5369.70.91Contig7585_atContig7585--2e+0At3g54490RPB5E (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, E)O.I.H.G.S.X.
0.5268.30.89Contig4112_atContig4112--6e-1At2g30560glycine-rich proteinO.I.H.G.S.X.
0.5268.30.89Contig16692_atContig16692--6e-19At1g14610TWN2 (TWIN 2)O.I.H.G.S.X.
0.5268.30.91Contig21214_atContig21214--2e-1At1g27240paired amphipathic helix repeat-containing proteinO.I.H.G.S.X.
0.5167.50.90Contig19360_atContig19360--2e-1At3g61590HWS (HAWAIIAN SKIRT)O.I.H.G.S.X.
0.5167.50.88Contig15913_atContig15913--5e-3At2g17760aspartyl protease family proteinO.I.H.G.S.X.
0.5066.90.91Contig15729_atContig15729--3e-2At3g11280myb family transcription factorO.I.H.G.S.X.
0.4963.70.91Contig8373_atContig8373--5e-1At5g49280hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.4963.70.91HW07B05u_atHW07B05u--1e+0At3g22820allergen-relatedO.I.H.G.S.X.
0.4458.90.93HK04P18r_s_atHK04P18rCesA6 protein-2e+1Atcg00130-O.I.H.G.S.X.
0.4458.90.88Contig5708_atContig5708--1e+0At2g47280pectinesteraseO.I.H.G.S.X.
0.4458.90.92Contig6638_atContig6638--1e+0At1g21880LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR)O.I.H.G.S.X.
0.4356.40.88Contig5829_atContig5829--4e+0At4g33770inositol 1,3,4-trisphosphate 5/6-kinase family proteinO.I.H.G.S.X.
0.4356.40.91Contig12292_atContig12292--1e+1At5g25475DNA bindingO.I.H.G.S.X.
0.4153.90.91Contig15042_atContig15042--7e-3At2g27760ATIPT2 (TRNA ISOPENTENYLTRANSFERASE 2)O.I.H.G.S.X.
0.4053.10.91Contig22141_atContig22141--3e+0At3g07440unknown proteinO.I.H.G.S.X.
0.3647.10.91Contig13209_atContig13209--6e-1At4g39070zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.3647.10.91Contig5048_s_atContig5048--8e-2At1g20600DNA-binding protein-relatedO.I.H.G.S.X.
0.3443.60.91Contig7486_atContig7486--2e+0At4g26220caffeoyl-CoA 3-O-methyltransferase, putativeO.I.H.G.S.X.
0.3240.30.92Contig733_atContig733--8e-19At3g0484040S ribosomal protein S3A (RPS3aA)O.I.H.G.S.X.
0.2935.50.92HI04H23u_atHI04H23u--4e+0At5g15290integral membrane family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.299.0GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.498.8GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.598.2GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.997.9GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.497.5GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.795.5GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.494.8GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.093.8GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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