Co-expression analysis

Gene ID	Contig10824_at
Gene name
Homology with Arabidopsis	Similar to At5g11350: endonuclease/exonuclease/phosphatase family protein (HF=7e-2)
Module size	6 genes
NF	0.48
%ile	66.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig10824_at	Contig10824	-	-	7e-2	At5g11350	endonuclease/exonuclease/phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.96	Contig3699_s_at	Contig3699	-	-	1e+0	At2g26060	emb1345 (embryo defective 1345)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	Contig7571_at	Contig7571	-	-	2e+0	At5g44070	CAD1 (CADMIUM SENSITIVE 1)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig4299_at	Contig4299	-	-	3e-7	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	Contig8312_at	Contig8312	-	-	1e-1	At3g23610	dual specificity protein phosphatase (DsPTP1)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig6264_at	Contig6264	-	-	2e-5	At3g11330	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
62.6	100.0	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.6	92.3	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.3	90.9	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.3	90.9	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
2.2	90.3	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
2.2	90.3	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.1	89.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.1	89.7	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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