Co-expression analysis

Gene ID	Contig10771_s_at
Gene name
Homology with Arabidopsis	Similar to At5g06043: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.10
%ile	13.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.94	Contig10771_s_at	Contig10771	-	-	3e+0	At5g06043	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.95	Contig22065_at	Contig22065	-	-	4e+0	At3g58710	WRKY69	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.95	Contig2135_s_at	Contig2135	-	-	4e-2	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.95	Contig13332_at	Contig13332	-	-	2e+0	At1g68280	thioesterase-related	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.95	Contig12408_at	Contig12408	-	-	6e-1	At2g34860	EDA3 (embryo sac development arrest 3)	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.95	Contig10064_at	Contig10064	-	-	2e+0	At2g12465	LCR50 (Low-molecular-weight cysteine-rich 50)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.6	99.0	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.5	98.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.2	94.3	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
2.9	93.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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