Co-expression analysis

Gene ID	Contig10724_at
Gene name
Homology with Arabidopsis	Similar to At3g48890: ATMP2 (HF=1e-10)
Module size	13 genes
NF	0.29
%ile	38.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	81.4	0.95	Contig10724_at	Contig10724	-	-	1e-10	At3g48890	ATMP2	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig13436_at	Contig13436	-	-	3e-1	At3g23200	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.96	Contig13168_at	Contig13168	-	-	3e+0	At5g50130	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig13036_at	Contig13036	-	-	6e-1	At3g57000	nucleolar essential protein-related	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.95	Contig4654_at	Contig4654	-	-	2e-2	At3g57930	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.96	Contig6491_at	Contig6491	-	-	6e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig11193_s_at	Contig11193	-	-	2e-2	At1g72880	acid phosphatase survival protein SurE, putative	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig3848_at	Contig3848	-	-	7e-23	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	Contig8100_at	Contig8100	-	-	1e-24	At5g22000	RHF2A (RING-H2 GROUP F2A)	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.96	Contig4414_at	Contig4414	-	-	5e-3	At2g03320	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	Contig7040_at	Contig7040	-	-	6e-8	At3g54670	TTN8 (TITAN8)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.96	Contig23171_at	Contig23171	-	-	2e+0	At1g11570	nuclear transport factor 2 (NTF2), putative	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.95	Contig7178_s_at	Contig7178	-	-	2e+0	At4g35900	FD	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.5	99.0	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.2	98.7	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.7	95.5	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.1	94.1	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.4	91.4	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.4	91.4	GSM160823	19% SWC rep1	GSE6990	Barley drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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