Co-expression analysis

Gene ID	Contig1071_s_at
Gene name
Homology with Arabidopsis	Similar to At5g19090: heavy-metal-associated domain-containing protein (HF=5e-3)
Module size	11 genes
NF	0.48
%ile	66.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	94.3	0.82	Contig1071_s_at	Contig1071	-	-	5e-3	At5g19090	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.87	Contig4958_at	Contig4958	-	-	2e+0	At1g51560	FMN binding	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.85	Contig12297_at	Contig12297	-	-	1e+0	At3g13190	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.89	Contig12125_at	Contig12125	-	-	6e+0	At3g07522	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.86	Contig4191_at	Contig4191	-	-	2e-6	At5g08180	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.86	HVSMEb0005M08r2_at	HVSMEb0005M08r2	-	-	3e-28	At4g05050	UBQ11 (UBIQUITIN 11)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.87	Contig11329_at	Contig11329	-	-	8e-3	At5g44570	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.83	Contig7382_at	Contig7382	-	-	2e-13	At1g43670	fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.86	Contig7382_s_at	Contig7382	-	-	2e-13	At1g43670	fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.87	Contig11402_s_at	Contig11402	-	-	1e+1	At3g02240	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.87	Contig5059_s_at	Contig5059	RNase S-like protein	-	7e+0	At5g35090	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.7	99.5	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
13.9	99.5	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.7	99.2	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.4	99.2	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.2	99.1	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.5	99.0	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.2	98.7	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.0	98.7	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.9	98.7	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.2	98.5	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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