Co-expression analysis

Gene ID	Contig10699_at
Gene name	Mg-protoporphyrin IX
Homology with Arabidopsis	Similar to At1g08520: CHLD (HF=2e-23)
Module size	6 genes
NF	0.56
%ile	78.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	53.1	0.89	Contig10699_at	Contig10699	Mg-protoporphyrin IX	-	2e-23	At1g08520	CHLD	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.89	Contig807_s_at	Contig807	-	-	6e-53	At1g55490	CPN60B (CHAPERONIN 60 BETA)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.91	Contig12332_at	Contig12332	-	-	4e+0	At3g50410	OBP1 (OBF BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.89	Contig13202_at	Contig13202	-	-	2e+0	At3g02150	PTF1 (PLASTID TRANSCRIPTION FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.91	Contig26369_at	Contig26369	-	-	4e+0	At4g02620	vacuolar ATPase subunit F family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.91	Contig11177_at	Contig11177	-	-	5e-1	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
32.4	99.9	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
11.6	99.3	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.6	98.8	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.5	98.2	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.1	97.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.1	96.2	GSM398277	Moroc9-75_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.8	95.7	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the maize gene, Zm.6828.1.A1_at, orthologous to the query gene, Contig10699_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	96.8	Zm.6828.1.A1_at	At1g08520	-	-	2e-1	At1g02710	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.11338.1.A1_at	At1g08520	hypothetical protein LOC100274516	-	3e-6	At2g40190	glycosyl transferase family 1 protein	O.I.	H.G.	S.X.	Please select
0.45	56.4	Zm.11328.1.A1_at	At1g08520	hypothetical protein LOC100274553	-	6e+0	At2g30130	ASL5	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.4774.1.A1_at	At1g08520	hypothetical protein LOC100191958	-	1e+0	At3g26360	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.14898.1.A1_x_at	At1g08520	-	-	4e+0	At3g43800	ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.12746.1.A1_at	At1g08520	somatic embryogenesis related protein	-	1e+0	At2g18530	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	ZmAffx.398.1.A1_at	At1g08520	-	-	3e+0	At4g15150	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.14524.1.S1_at	At1g08520	hypothetical protein LOC100272454	-	8e-3	At4g38620	MYB4	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.5064.1.S1_at	At1g08520	-	-	2e-24	At1g29880	glycyl-tRNA synthetase / glycine--tRNA ligase	O.I.	H.G.	S.X.	Please select
0.34	37.2	ZmAffx.824.1.S1_at	At1g08520	-	-	3e+0	At5g20370	serine-rich protein-related	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.1134.1.A1_at	At1g08520	hypothetical protein LOC100193278	-	3e+0	At2g26940	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.11611.1.A1_at	At1g08520	hypothetical protein LOC100192942	-	5e+0	At1g07400	17.8 kDa class I heat shock protein (HSP17.8-CI)	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.2034.1.S1_at	At1g08520	hypothetical protein LOC100277458	-	1e+0	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.2012.1.S1_at	At1g08520	-	-	8e+0	At5g23220	NIC3 (NICOTINAMIDASE 3)	O.I.	H.G.	S.X.	Please select
0.23	18.6	ZmAffx.732.1.A1_at	At1g08520	-	-	5e+0	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.5070.1.A1_at	At1g08520	hypothetical protein LOC100193023	-	2e-16	At1g22950	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.16824.1.S1_at	At1g08520	SAM domain family protein	-	5e-1	At3g07170	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	ZmAffx.587.1.A1_at	At1g08520	-	-	3e+0	At5g35900	LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35)	O.I.	H.G.	S.X.	Please select
0.19	12.8	Zm.5115.1.A1_at	At1g08520	hypothetical protein LOC100272658	-	2e-46	At3g20290	ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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