Co-expression analysis

Gene ID	Contig10699_at
Gene name	Mg-protoporphyrin IX
Homology with Arabidopsis	Similar to At1g08520: CHLD (HF=2e-23)
Module size	6 genes
NF	0.56
%ile	78.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	53.1	0.89	Contig10699_at	Contig10699	Mg-protoporphyrin IX	-	2e-23	At1g08520	CHLD	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.89	Contig807_s_at	Contig807	-	-	6e-53	At1g55490	CPN60B (CHAPERONIN 60 BETA)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.91	Contig12332_at	Contig12332	-	-	4e+0	At3g50410	OBP1 (OBF BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.89	Contig13202_at	Contig13202	-	-	2e+0	At3g02150	PTF1 (PLASTID TRANSCRIPTION FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.91	Contig26369_at	Contig26369	-	-	4e+0	At4g02620	vacuolar ATPase subunit F family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.91	Contig11177_at	Contig11177	-	-	5e-1	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
32.4	99.9	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
11.6	99.3	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.6	98.8	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.5	98.2	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.1	97.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.1	96.2	GSM398277	Moroc9-75_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.8	95.7	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the grape gene, 1618771_s_at, orthologous to the query gene, Contig10699_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1618771_s_at	At1g08520	hypothetical protein LOC100262843	-	3e-4	At1g25560	TEM1 (TEMPRANILLO 1)	O.I.	H.G.	S.X.	Please select
0.80	93.6	1618998_at	At1g08520	-	-	5e-16	At4g01500	NGA4 (NGATHA4)	O.I.	H.G.	S.X.	Please select
0.55	77.3	1612753_at	At1g08520	hypothetical protein LOC100260428	-	3e-1	At1g09932	phosphoglycerate/bisphosphoglycerate mutase-related	O.I.	H.G.	S.X.	Please select
0.55	77.3	1609629_at	At1g08520	hypothetical protein LOC100250476	-	3e-17	At5g13330	Rap2.6L (related to AP2 6L)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1620628_at	At1g08520	neutral invertase	-	2e-37	At1g56560	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	O.I.	H.G.	S.X.	Please select
0.21	24.0	1619585_at	At1g08520	hypothetical protein LOC100252208	-	4e-1	At1g72620	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage