Co-expression analysis

Gene ID Contig10699_at
Gene name Mg-protoporphyrin IX
Homology with ArabidopsisSimilar to At1g08520: CHLD (HF=2e-23)
Module size 6 genes
NF 0.56
%ile 78.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4053.10.89Contig10699_atContig10699Mg-protoporphyrin IX-2e-23At1g08520CHLDO.I.H.G.S.X.
0.9198.10.89Contig807_s_atContig807--6e-53At1g55490CPN60B (CHAPERONIN 60 BETA)O.I.H.G.S.X.
0.6784.70.91Contig12332_atContig12332--4e+0At3g50410OBP1 (OBF BINDING PROTEIN 1)O.I.H.G.S.X.
0.5774.90.89Contig13202_atContig13202--2e+0At3g02150PTF1 (PLASTID TRANSCRIPTION FACTOR 1)O.I.H.G.S.X.
0.4053.10.91Contig26369_atContig26369--4e+0At4g02620vacuolar ATPase subunit F family proteinO.I.H.G.S.X.
0.3342.60.91Contig11177_atContig11177--5e-1At5g53730harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
32.499.9GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
11.699.3GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.698.8GSM398262HS41-1_0d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
6.598.2GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.598.2GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.198.0GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.197.3GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.296.3GSM431573pathogen isolates: Polymyxa betae - rep3GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.196.2GSM398277Moroc9-75_1d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.895.7GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g08520, orthologous to the query gene, Contig10699_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.9296.0At1g08520837374CHLDF:magnesium chelatase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:chlorophyll biosynthetic process;C:magnesium chelatase complex, chloroplast;MOBFPVAO.I.H.G.S.X.
0.5065.3At2g47940819406DEGP2Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.O.I.H.G.S.X.
0.5065.3At4g01690827991PPOXEncodes protoporphyrinogen oxidase (PPOX).O.I.H.G.S.X.
0.3541.6At4g15110827177CYP97B3member of CYP97BO.I.H.G.S.X.
0.2319.3At2g41680818766NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C)Encodes a NADPH thioredoxin reductase involved in chloroplast protection against oxidative damage.O.I.H.G.S.X.
0.2217.5At4g30950829220FAD6 (FATTY ACID DESATURASE 6)Chloroplastic enzyme responsible for the synthesis of 16:2 and 18:2 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene mutation resulted in reduced level of unsaturated fatty acids leading to susceptibility to photoinhibition.O.I.H.G.S.X.
0.1912.7At3g63490825524ribosomal protein L1 family proteinF:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:in 6 components;OBAFMPO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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