Co-expression analysis

Gene ID Contig10689_at
Gene name
Homology with ArabidopsisSimilar to At2g40360: transducin family protein / WD-40 repeat family protein (HF=3e-10)
Module size 6 genes
NF 0.49
%ile 68.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.90Contig10689_atContig10689--3e-10At2g40360transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.6784.70.89Contig9421_atContig9421--3e-7At5g19690STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A)O.I.H.G.S.X.
0.5572.00.89Contig10688_atContig10688--8e+0At5g65430GRF8 (GENERAL REGULATORY FACTOR 8)O.I.H.G.S.X.
0.5066.90.92Contig13383_atContig13383--1e-8At2g48010RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)O.I.H.G.S.X.
0.4458.90.92Contig21173_atContig21173--3e-23At2g35190NPSN11 (NOVEL PLANT SNARE 11)O.I.H.G.S.X.
0.1514.10.90Contig7824_atContig7824--1e+1At5g23100unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.399.1GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.898.9GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.498.8GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.998.7GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.598.6GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.398.1GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.097.2GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.696.8GSM238438Embryo 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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