Co-expression analysis

Gene ID Contig10686_s_at
Gene name
Homology with ArabidopsisSimilar to At4g24180: - (HF=4e-8)
Module size 6 genes
NF 0.10
%ile 12.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.89Contig10686_s_atContig10686--4e-8At4g24180-O.I.H.G.S.X.
0.1412.90.94Contig6293_atContig6293--5e-4At1g77370glutaredoxin, putativeO.I.H.G.S.X.
0.108.40.94Contig8161_atContig8161--8e-2At2g46640unknown proteinO.I.H.G.S.X.
0.097.40.94Contig9853_atContig9853--3e+0At5g12140ATCYS1 (A. thaliana cystatin-1)O.I.H.G.S.X.
0.064.80.93Contig13631_atContig13631--5e-2At3g20720unknown proteinO.I.H.G.S.X.
0.043.40.95Contig8195_atContig8195--4e-90At2g21790RNR1 (RIBONUCLEOTIDE REDUCTASE 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.8GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
3.294.3GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.194.1GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.792.7GSM146379Maythorpe shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.792.7GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.692.3GSM419976Palea_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
2.692.3GSM440964Control palea_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.692.3GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
2.591.9GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.491.4GSM398261HS41-1_0d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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