Co-expression analysis

Gene ID	Contig10671_at
Gene name
Homology with Arabidopsis	Similar to At5g64160: unknown protein (HF=4e-1)
Module size	6 genes
NF	0.09
%ile	11.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	0.76	Contig10671_at	Contig10671	-	-	4e-1	At5g64160	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.79	Contig17265_at	Contig17265	-	-	2e-13	At1g22800	methyltransferase	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.80	Contig3346_at	Contig3346	-	-	6e-2	At2g29850	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.79	HV10L10u_at	HV10L10u	-	-	3e+0	At2g05520	GRP-3 (GLYCINE-RICH PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.80	Contig2742_at	Contig2742	-	-	2e+0	At3g27070	TOM20-1 (translocase outer membrane 20-1)	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.79	Contig7195_at	Contig7195	-	-	5e-1	At5g41210	ATGSTT1 (GLUTATHIONE S-TRANSFERASE THETA 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.8	98.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.6	98.8	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.1	98.4	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.1	98.4	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.9	95.8	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.7	95.5	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.7	95.5	GSM372945	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the wheat gene, Ta.14605.1.S1_at, orthologous to the query gene, Contig10671_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.1	Ta.14605.1.S1_at	At5g64160	-	-	3e-1	At5g64160	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.1043.1.S1_at	At5g64160	-	-	2e-4	At3g52800	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.23107.3.S1_a_at	At5g64160	-	-	1e-28	At3g46060	ATRAB8A	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.23107.3.S1_x_at	At5g64160	-	-	1e-28	At3g46060	ATRAB8A	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.9411.3.S1_x_at	At5g64160	-	-	2e-4	At1g16810	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.9176.1.S1_at	At5g64160	-	-	7e-47	At1g02130	ARA-5 (ARABIDOPSIS RAS 5)	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.9411.1.S1_a_at	At5g64160	-	-	5e-4	At1g16810	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.2204.3.S1_x_at	At5g64160	-	-	8e-8	At4g00585	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.22949.1.S1_a_at	At5g64160	-	-	3e-1	At3g17220	PMEI2	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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