Co-expression analysis

Gene ID	Contig10647_at
Gene name
Homology with Arabidopsis	Similar to At2g20930: - (HF=2e-46)
Module size	6 genes
NF	0.50
%ile	70.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.97	Contig10647_at	Contig10647	-	-	2e-46	At2g20930	-	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.96	Contig11284_at	Contig11284	-	-	9e-6	At2g22475	GEM (GL2-EXPRESSION MODULATOR)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.96	Contig8766_at	Contig8766	-	-	8e-7	At4g12130	aminomethyltransferase	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig11618_at	Contig11618	-	-	5e+0	At2g11890	adenylate cyclase	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.96	Contig13332_at	Contig13332	-	-	2e+0	At1g68280	thioesterase-related	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	Contig9632_at	Contig9632	-	-	1e-1	At1g78370	ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	97.4	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3	94.6	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2	94.3	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.2	94.3	GSM373004	genotype: 11542 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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