CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig10627_at

Gene name
Homology with Arabidopsis Similar to At5g62270: - (HF=1e-5)

Module size 6 genes

NF 0.31

%ile 41.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.85 Contig10627_at Contig10627 - - 1e-5 At5g62270 - O.I. H.G. S.X.
0.50 66.9 0.88 Contig14748_at Contig14748 - - 5e+0 At4g02482 chloroplast outer envelope GTP-binding protein, putative O.I. H.G. S.X.
0.33 42.6 0.88 EBro02_SQ006_L04_x_at EBro02_SQ006_L04 - - 2e+1 At5g39010 unknown protein O.I. H.G. S.X.
0.29 35.5 0.88 Contig17530_at Contig17530 - - 6e-3 At4g00380 XH/XS domain-containing protein / XS zinc finger domain-containing protein O.I. H.G. S.X.
0.26 30.4 0.85 EBro02_SQ006_L04_at EBro02_SQ006_L04 - - 2e+1 At5g39010 unknown protein O.I. H.G. S.X.
0.13 11.6 0.86 Contig14554_at Contig14554 - - 7e+0 At5g06240 emb2735 (embryo defective 2735) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.5 99.7 GSM431549 pathogen isolates: Polymyxa graminis - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
13.4 99.4 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
8.9 98.9 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.3 98.8 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.9 98.7 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
7.6 98.6 GSM431547 pathogen isolates: Mock - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
7.1 98.4 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.8 98.3 GSM431550 pathogen isolates: Polymyxa graminis - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
6.5 98.2 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.7 97.7 GSM431573 pathogen isolates: Polymyxa betae - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

Inter-species module comparison

A co-expression module including the maize gene, Zm.10138.1.S1_at, orthologous to the query gene, Contig10627_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 79.5 Zm.10138.1.S1_at At5g62270 hypothetical protein LOC100193812 - 8e-7 At5g62270 - O.I. H.G. S.X.
0.67 85.8 ZmAffx.401.1.S1_at At5g62270 - - 2e-1 At5g46030 unknown protein O.I. H.G. S.X.
0.67 85.8 Zm.9627.1.A1_at At5g62270 - - 1e+0 At4g21830 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein O.I. H.G. S.X.
0.43 52.8 Zm.6732.1.S1_s_at At5g62270 HMG-like nucleosome/chromatin assembly factor D - 3e-11 At1g20696 HMGB3 (HIGH MOBILITY GROUP B 3) O.I. H.G. S.X.
0.38 44.2 Zm.18044.1.A1_at At5g62270 RNA polymerase II largest subunit - 2e-123 At4g35800 NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) O.I. H.G. S.X.
0.30 29.8 Zm.5048.3.S1_x_at At5g62270 hypothetical protein LOC100279926 - 3e-57 At4g24190 SHD (SHEPHERD) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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