Co-expression analysis

Gene ID	Contig10627_at
Gene name
Homology with Arabidopsis	Similar to At5g62270: - (HF=1e-5)
Module size	6 genes
NF	0.31
%ile	41.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.85	Contig10627_at	Contig10627	-	-	1e-5	At5g62270	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.88	Contig14748_at	Contig14748	-	-	5e+0	At4g02482	chloroplast outer envelope GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.88	EBro02_SQ006_L04_x_at	EBro02_SQ006_L04	-	-	2e+1	At5g39010	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.88	Contig17530_at	Contig17530	-	-	6e-3	At4g00380	XH/XS domain-containing protein / XS zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.85	EBro02_SQ006_L04_at	EBro02_SQ006_L04	-	-	2e+1	At5g39010	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.86	Contig14554_at	Contig14554	-	-	7e+0	At5g06240	emb2735 (embryo defective 2735)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.5	99.7	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
13.4	99.4	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
8.9	98.9	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.3	98.8	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.9	98.7	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
7.6	98.6	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
7.1	98.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
6.5	98.2	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

Inter-species module comparison

A co-expression module including the grape gene, 1607170_s_at, orthologous to the query gene, Contig10627_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.9	1607170_s_at	At5g62270	-	-	5e-2	At3g44735	PSK1	O.I.	H.G.	S.X.	Please select
0.50	72.7	1622325_a_at	At5g62270	similar to CDPK-like protein	-	4e+0	At4g07350	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	1616531_at	At5g62270	hypothetical protein LOC100262541	-	8e-1	At1g60420	DC1 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	1615298_s_at	At5g62270	-	-	9e-1	At2g43910	thiol methyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.32	43.1	1609334_at	At5g62270	hypothetical protein LOC100246202	-	2e-30	At1g63160	replication factor C 40 kDa, putative	O.I.	H.G.	S.X.	Please select
0.31	41.3	1613759_s_at	At5g62270	hypothetical protein LOC100259323	-	1e+0	At1g74870	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.25	30.5	1616195_at	At5g62270	-	-	1e+0	At5g27460	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	1618287_at	At5g62270	hypothetical protein LOC100241989	-	7e-2	At2g22540	SVP (SHORT VEGETATIVE PHASE)	O.I.	H.G.	S.X.	Please select
0.15	15.6	1621759_s_at	At5g62270	hypothetical protein LOC100245610 /// hypothetical protein LOC100246974	-	3e-2	At4g36260	STY2 (STYLISH 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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