Co-expression analysis

Gene ID	Contig10627_at
Gene name
Homology with Arabidopsis	Similar to At5g62270: - (HF=1e-5)
Module size	6 genes
NF	0.31
%ile	41.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.85	Contig10627_at	Contig10627	-	-	1e-5	At5g62270	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.88	Contig14748_at	Contig14748	-	-	5e+0	At4g02482	chloroplast outer envelope GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.88	EBro02_SQ006_L04_x_at	EBro02_SQ006_L04	-	-	2e+1	At5g39010	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.88	Contig17530_at	Contig17530	-	-	6e-3	At4g00380	XH/XS domain-containing protein / XS zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.85	EBro02_SQ006_L04_at	EBro02_SQ006_L04	-	-	2e+1	At5g39010	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.86	Contig14554_at	Contig14554	-	-	7e+0	At5g06240	emb2735 (embryo defective 2735)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.5	99.7	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
13.4	99.4	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
8.9	98.9	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.3	98.8	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.9	98.7	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
7.6	98.6	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
7.1	98.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
6.5	98.2	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.76750.1.S1_at, orthologous to the query gene, Contig10627_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	83.4	GmaAffx.76750.1.S1_at	At5g62270	-	-	1e-3	At5g62270	-	O.I.	H.G.	S.X.	Please select
0.78	90.6	GmaAffx.93061.1.S1_s_at	At5g62270	-	-	5e-6	At3g19130	ATRBP47B (RNA-binding protein 47B)	O.I.	H.G.	S.X.	Please select
0.60	80.7	GmaAffx.12092.1.S1_at	At5g62270	-	-	8e-4	At5g62190	PRH75	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.93061.1.S1_at	At5g62270	-	-	5e-6	At3g19130	ATRBP47B (RNA-binding protein 47B)	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.1425.2.S1_a_at	At5g62270	-	-	3e-7	At5g06770	KH domain-containing protein / zinc finger (CCCH type) family protein	O.I.	H.G.	S.X.	Please select
0.26	33.9	GmaAffx.77005.1.S1_at	At5g62270	-	-	1e-72	At3g58610	ketol-acid reductoisomerase	O.I.	H.G.	S.X.	Please select
0.19	23.7	GmaAffx.76248.1.S1_at	At5g62270	-	-	9e-2	At4g30920	cytosol aminopeptidase family protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	Gma.1752.2.S1_at	At5g62270	-	-	2e-16	At5g61020	ECT3	O.I.	H.G.	S.X.	Please select
0.16	19.7	GmaAffx.92745.1.S1_s_at	At5g62270	-	-	7e-2	At3g19130	ATRBP47B (RNA-binding protein 47B)	O.I.	H.G.	S.X.	Please select
0.04	7.0	Gma.7209.1.A1_at	At5g62270	-	-	8e-2	At4g36630	EMB2754 (EMBRYO DEFECTIVE 2754)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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