Co-expression analysis

Gene ID	Contig10621_at
Gene name
Homology with Arabidopsis	Similar to At1g14315: - (HF=4e-1)
Module size	6 genes
NF	0.43
%ile	59.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.0	0.95	Contig10621_at	Contig10621	-	-	4e-1	At1g14315	-	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.96	Contig6884_s_at	Contig6884	-	-	9e-5	At4g34100	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.95	Contig5857_at	Contig5857	-	-	2e-1	At1g02965	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.95	Contig15213_at	Contig15213	-	-	1e-1	At4g27745	-	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig5087_at	Contig5087	-	-	1e-2	At4g17520	nuclear RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	HVSMEg0010L05r2_at	HVSMEg0010L05r2	-	-	2e+0	At2g45610	hydrolase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.7	98.9	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.3	98.8	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
6.5	98.2	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.2	97.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
3.9	95.8	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2	94.3	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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