Co-expression analysis

Gene ID Contig10608_at
Gene name
Homology with ArabidopsisSimilar to At1g08040: unknown protein (HF=6e-32)
Module size 10 genes
NF 0.26
%ile 33.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7589.50.93Contig10608_atContig10608--6e-32At1g08040unknown proteinO.I.H.G.S.X.
0.5268.30.94Contig5465_atContig5465--2e-4At5g60460sec61beta family proteinO.I.H.G.S.X.
0.3950.50.94Contig18674_atContig18674--5e-1At1g67050unknown proteinO.I.H.G.S.X.
0.2935.50.94Contig514_s_atContig514ribosome-inactivating protein-5e-4At5g15265unknown proteinO.I.H.G.S.X.
0.2732.10.95Contig14639_atContig14639--8e+0At5g47175LCR3 (Low-molecular-weight cysteine-rich 3)O.I.H.G.S.X.
0.2224.20.94Contig3338_s_atContig3338--8e-4At3g23080-O.I.H.G.S.X.
0.2021.10.95Contig15745_atContig15745--1e-1At1g35830VQ motif-containing proteinO.I.H.G.S.X.
0.1615.30.95Contig3497_s_atContig3497--4e+0At5g67190AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.1412.90.95Contig21054_atContig21054--8e-9At4g27270quinone reductase family proteinO.I.H.G.S.X.
0.1210.40.94Contig13507_atContig13507--2e+0At4g24370unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.599.8GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
16.999.6GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
13.099.4GSM311254hsp5_with_aphids_2GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
9.799.0GSM311255hsp5_with_aphids_3GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
5.397.4GSM31120528-4_with_aphids_2GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
4.897.0GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.897.0GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.897.0GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM31120428-4_with_aphids_1GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
4.196.2GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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