Co-expression analysis

Gene ID	Contig105_at
Gene name
Homology with Arabidopsis	Similar to At1g09200: histone H3 (HF=7e-36)
Module size	6 genes
NF	0.46
%ile	64.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.95	Contig105_at	Contig105	-	-	7e-36	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.95	Contig6253_at	Contig6253	-	-	3e-19	At5g26030	FC1 (ferrochelatase 1)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.95	Contig11817_at	Contig11817	-	-	3e-2	At5g45590	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	Contig9837_at	Contig9837	-	-	1e-5	At5g57930	APO2 (ACCUMULATION OF PHOTOSYSTEM ONE 2)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig8078_at	Contig8078	-	-	7e-26	At2g42880	ATMPK20	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	Contig863_s_at	Contig863	-	-	3e-6	At3g02720	DJ-1 family protein / protease-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.0	98.9	GSM71157	Steptoe stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
8.9	98.9	GSM71153	Barke stress and unstress replicate 4	GSE3170	Barley single feature polymorphisms and drought stress gene expression
8.4	98.8	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
8.4	98.8	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
7.1	98.4	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM71152	Barke stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
6.3	98.1	GSM71147	OWB-D unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
6.2	98.0	GSM71158	Steptoe stress and unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
5.8	97.8	GSM71146	OWB-D unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
5.7	97.7	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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