Co-expression analysis

Gene ID	Contig10536_at
Gene name
Homology with Arabidopsis	Similar to At2g18250: ATCOAD (4-phosphopantetheine adenylyltransferase) (HF=3e-2)
Module size	15 genes
NF	0.43
%ile	59.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	81.4	0.96	Contig10536_at	Contig10536	-	-	3e-2	At2g18250	ATCOAD (4-phosphopantetheine adenylyltransferase)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	Contig2846_at	Contig2846	-	-	3e-5	At2g27285	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig5361_at	Contig5361	-	-	3e+0	At4g29103	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.96	Contig14012_at	Contig14012	-	-	7e-1	At4g23920	UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2)	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.96	rbah36l17_s_at	rbah36l17	-	-	7e-30	At1g30580	GTP binding	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig6751_at	Contig6751	-	-	1e+0	At3g04990	-	O.I.	H.G.	S.X.	Please select
0.45	59.3	0.96	Contig5893_at	Contig5893	-	-	1e-52	At1g04170	EIF2 GAMMA	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig8853_at	Contig8853	-	-	1e-1	At1g19360	-	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig8886_at	Contig8886	-	-	8e-18	At1g63660	GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig3403_s_at	Contig3403	-	-	2e-2	At5g03850	40S ribosomal protein S28 (RPS28B)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig16073_at	Contig16073	-	-	3e-2	At5g37200	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.97	Contig18044_at	Contig18044	-	-	1e+0	At3g47070	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig326_x_at	Contig326	-	-	0	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig3967_at	Contig3967	-	-	6e-16	At5g47040	LON2 (LON PROTEASE 2)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig4131_at	Contig4131	-	-	2e-23	At1g77490	TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	97.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.8	97.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3	96.4	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM372949	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.9	95.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.7	95.5	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2	94.3	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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