Co-expression analysis

Gene ID	Contig10535_at
Gene name
Homology with Arabidopsis	Similar to At3g14080: small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (HF=1e-4)
Module size	7 genes
NF	0.20
%ile	24.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	0.95	Contig10535_at	Contig10535	-	-	1e-4	At3g14080	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	Contig14475_s_at	Contig14475	-	-	3e-2	At4g12050	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.96	Contig9614_at	Contig9614	-	-	3e-17	At2g17240	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.96	Contig12438_at	Contig12438	-	-	2e-5	At5g08740	NDC1 (NAD(P)H dehydrogenase C1)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.96	Contig682_s_at	Contig682	-	-	9e-13	At3g10410	scpl49 (serine carboxypeptidase-like 49)	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.96	Contig4218_at	Contig4218	-	-	1e-19	At1g26270	phosphatidylinositol 3- and 4-kinase family protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.95	Contig12612_at	Contig12612	-	-	5e-3	At1g01170	ozone-responsive stress-related protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	94.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.1	94.1	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM372971	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.5	91.9	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
2.3	90.9	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.3	90.9	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
2.3	90.9	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.3	90.9	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.2	90.3	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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