Co-expression analysis

Gene ID Contig10503_at
Gene name
Homology with ArabidopsisSimilar to At5g53180: PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) (HF=1e-2)
Module size 7 genes
NF 0.20
%ile 24.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5975.80.91Contig10503_atContig10503--1e-2At5g53180PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)O.I.H.G.S.X.
0.5066.90.92HVSMEg0001O11r2_atHVSMEg0001O11r2--3e-1At5g47840AMK2 (Adenosine monophosphate kinase)O.I.H.G.S.X.
0.1919.60.93Contig26615_atContig26615--6e+0At5g20160ribosomal protein L7Ae/L30e/S12e/Gadd45 family proteinO.I.H.G.S.X.
0.1716.90.93Contig8028_atContig8028--7e-14At4g21470ATFMN/FHY (riboflavin kinase/FMN hydrolase)O.I.H.G.S.X.
0.1412.90.91Contig11582_atContig11582--4e-6At1g24120ARL1 (ARG1-LIKE 1)O.I.H.G.S.X.
0.1412.90.91Contig11840_s_atContig11840--3e-2At2g25720unknown proteinO.I.H.G.S.X.
0.108.40.92Contig13477_atContig13477--2e-3At1g72230plastocyanin-like domain-containing proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.998.7GSM688933 h salt stressed replicate 2GSE3097Barley1 salinity stress studyLink to GEO
5.897.8GSM688998 h salt stressed replicate 2GSE3097Barley1 salinity stress studyLink to GEO
5.397.4GSM6890527 h salt stressed replicate 2GSE3097Barley1 salinity stress studyLink to GEO
5.297.4GSM688923 h salt stressed replicate 1GSE3097Barley1 salinity stress studyLink to GEO
4.997.1GSM688903 h control replicate 2GSE3097Barley1 salinity stress studyLink to GEO
4.796.9GSM688968 h control replicate 2GSE3097Barley1 salinity stress studyLink to GEO
4.396.4GSM688988 h salt stressed replicate 1GSE3097Barley1 salinity stress studyLink to GEO
4.196.2GSM6890427 h salt stressed replicate 1GSE3097Barley1 salinity stress studyLink to GEO
3.995.8GSM688958 h control replicate 1GSE3097Barley1 salinity stress studyLink to GEO
3.595.1GSM6890627 h salt stressed replicate 3GSE3097Barley1 salinity stress studyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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