Co-expression analysis

Gene ID	Contig104_x_at
Gene name
Homology with Arabidopsis	Similar to At3g07230: wound-responsive protein-related (HF=7e-2)
Module size	6 genes
NF	0.07
%ile	9.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.92	Contig104_x_at	Contig104	-	-	7e-2	At3g07230	wound-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.93	Contig23073_at	Contig23073	-	-	2e-1	At2g04622	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.93	Contig16086_at	Contig16086	-	-	6e-3	At4g39720	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.93	Contig8592_at	Contig8592	-	-	7e-1	At3g17090	protein phosphatase 2C family protein / PP2C family protein	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.94	Contig8975_at	Contig8975	-	-	2e-23	At4g36080	FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family protein	O.I.	H.G.	S.X.	Please select
0.03	2.6	0.92	Contig18843_at	Contig18843	-	-	3e-2	At4g31580	SRZ-22	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.7	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.7	97.7	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.8	97.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1	96.2	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM372974	genotype: 11542 - pathogen isolates: 5874 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM261027	ABA-Late-rep1	GSE10328	ABA experiment
3.6	95.3	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.5	95.1	GSM419980	Awn_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.5	95.1	GSM440971	Control awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.4	94.8	GSM372992	genotype: 11542 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the grape gene, 1614828_at, orthologous to the query gene, Contig104_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1614828_at	At3g07230	similar to Wound-induced basic protein	-	4e+0	At5g17360	-	O.I.	H.G.	S.X.	Please select
0.67	87.9	1619273_s_at	At3g07230	hypothetical protein LOC100254996	-	4e+0	At5g19370	rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	1620501_at	At3g07230	-	-	6e-23	At3g56020	60S ribosomal protein L41 (RPL41G)	O.I.	H.G.	S.X.	Please select
0.61	83.2	1617569_s_at	At3g07230	hypothetical protein LOC100246017	-	3e-14	At5g27700	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.57	79.8	1621995_at	At3g07230	hypothetical protein LOC100254996	-	1e-8	At4g24920	protein transport protein SEC61 gamma subunit, putative	O.I.	H.G.	S.X.	Please select
0.29	37.7	1618190_at	At3g07230	hypothetical protein LOC100254589	-	4e-72	At1g22780	PFL (POINTED FIRST LEAVES)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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