Co-expression analysis

Gene ID Contig104_x_at
Gene name
Homology with ArabidopsisSimilar to At3g07230: wound-responsive protein-related (HF=7e-2)
Module size 6 genes
NF 0.07
%ile 9.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5066.90.92Contig104_x_atContig104--7e-2At3g07230wound-responsive protein-relatedO.I.H.G.S.X.
0.5066.90.93Contig23073_atContig23073--2e-1At2g04622unknown proteinO.I.H.G.S.X.
0.2732.10.93Contig16086_atContig16086--6e-3At4g39720VQ motif-containing proteinO.I.H.G.S.X.
0.075.80.93Contig8592_atContig8592--7e-1At3g17090protein phosphatase 2C family protein / PP2C family proteinO.I.H.G.S.X.
0.064.80.94Contig8975_atContig8975--2e-23At4g36080FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family proteinO.I.H.G.S.X.
0.032.60.92Contig18843_atContig18843--3e-2At4g31580SRZ-22O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.797.7GSM419979Awn_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
5.797.7GSM440970Control awn_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.897.0GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.196.2GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.995.8GSM372974genotype: 11542 - pathogen isolates: 5874 - time: 0 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.795.5GSM261027ABA-Late-rep1GSE10328ABA experimentLink to GEO
3.695.3GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
3.595.1GSM419980Awn_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
3.595.1GSM440971Control awn_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.494.8GSM372992genotype: 11542 - pathogen isolates: K1 - time: 0 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.89587.1.S1_at, orthologous to the query gene, Contig104_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6891.3PtpAffx.89587.1.S1_atAt3g07230hypothetical protein-2e-8At3g07230wound-responsive protein-relatedO.I.H.G.S.X.
0.4268.6PtpAffx.139528.2.A1_atAt3g07230--4e-10At3g08570protein binding / signal transducerO.I.H.G.S.X.
0.2645.2PtpAffx.291.12.S1_atAt3g07230hypothetical protein-2e-24At1g35550elongation factor Tu C-terminal domain-containing proteinO.I.H.G.S.X.
0.2136.5PtpAffx.56930.1.A1_atAt3g07230--1e+0At5g26170WRKY50O.I.H.G.S.X.
0.2034.6PtpAffx.95904.1.A1_atAt3g07230--3e-1At2g01090ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putativeO.I.H.G.S.X.
0.2034.6PtpAffx.134623.1.A1_atAt3g07230--2e+0At5g39870unknown proteinO.I.H.G.S.X.
0.1729.1PtpAffx.133888.1.A1_atAt3g07230--7e-1At5g30495-O.I.H.G.S.X.
0.1729.1PtpAffx.206195.1.S1_atAt3g07230hypothetical protein-2e-2At5g19340unknown proteinO.I.H.G.S.X.
0.1729.1PtpAffx.223903.1.S1_x_atAt3g07230hypothetical protein-8e-1At1g32200ATS1O.I.H.G.S.X.
0.1525.3PtpAffx.26140.1.S1_atAt3g07230--3e+0At2g06983SCRL16 (SCR-Like 16)O.I.H.G.S.X.
0.1525.3Ptp.3270.1.S1_atAt3g07230--6e-7At3g08580AAC1 (ADP/ATP CARRIER 1)O.I.H.G.S.X.
0.1423.5PtpAffx.204293.1.S1_atAt3g07230--3e-6At5g37570pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.1321.6PtpAffx.203574.1.S1_s_atAt3g07230hypothetical protein-2e-3At1g67030ZFP6 (ZINC FINGER PROTEIN 6)O.I.H.G.S.X.
0.1219.6PtpAffx.222153.1.S1_atAt3g07230hypothetical protein-3e-2Atmg00030-O.I.H.G.S.X.
0.1016.3PtpAffx.215976.1.S1_atAt3g07230hypothetical protein-4e-25At3g07330ATCSLC6 (CELLULOSE-SYNTHASE LIKE C6)O.I.H.G.S.X.
0.0812.9PtpAffx.222656.1.S1_atAt3g07230hypothetical protein-4e-2At1g33340epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedO.I.H.G.S.X.
0.069.8PtpAffx.25334.2.S1_atAt3g07230hypothetical protein-1e+1At5g44574unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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