Co-expression analysis

Gene ID Contig104_x_at
Gene name
Homology with ArabidopsisSimilar to At3g07230: wound-responsive protein-related (HF=7e-2)
Module size 6 genes
NF 0.07
%ile 9.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5066.90.92Contig104_x_atContig104--7e-2At3g07230wound-responsive protein-relatedO.I.H.G.S.X.
0.5066.90.93Contig23073_atContig23073--2e-1At2g04622unknown proteinO.I.H.G.S.X.
0.2732.10.93Contig16086_atContig16086--6e-3At4g39720VQ motif-containing proteinO.I.H.G.S.X.
0.075.80.93Contig8592_atContig8592--7e-1At3g17090protein phosphatase 2C family protein / PP2C family proteinO.I.H.G.S.X.
0.064.80.94Contig8975_atContig8975--2e-23At4g36080FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family proteinO.I.H.G.S.X.
0.032.60.92Contig18843_atContig18843--3e-2At4g31580SRZ-22O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.797.7GSM419979Awn_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
5.797.7GSM440970Control awn_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.897.0GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.196.2GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.995.8GSM372974genotype: 11542 - pathogen isolates: 5874 - time: 0 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.795.5GSM261027ABA-Late-rep1GSE10328ABA experimentLink to GEO
3.695.3GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
3.595.1GSM419980Awn_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
3.595.1GSM440971Control awn_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.494.8GSM372992genotype: 11542 - pathogen isolates: K1 - time: 0 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os12g0405700, orthologous to the query gene, Contig104_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9299.1Os12g0405700At3g07230-Wound-induced basic protein1e-6At3g07230wound-responsive protein-relatedO.I.H.G.S.X.
0.7088.4Os08g0130500At3g07230-60S acidic ribosomal protein P07e-50At2g4001060S acidic ribosomal protein P0 (RPP0A)O.I.H.G.S.X.
0.7088.4Os09g0568400At3g07230-60S ribosomal protein L40 (CEP52)2e-52At3g52590UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)O.I.H.G.S.X.
0.6887.5Os02g0111700At3g07230-Ribosomal protein L37e family protein7e-3At1g1525060S ribosomal protein L37 (RPL37A)O.I.H.G.S.X.
0.6887.5Os03g0598800At3g07230-60S ribosomal protein L155e-50At4g1739060S ribosomal protein L15 (RPL15B)O.I.H.G.S.X.
0.6787.2Os04g0605900At3g07230-60S ribosomal protein L73e-30At2g0125060S ribosomal protein L7 (RPL7B)O.I.H.G.S.X.
0.6787.2Os01g0896800At3g07230-60S ribosomal protein L55e+0At5g25340unknown proteinO.I.H.G.S.X.
0.6483.4Os01g0938900At3g07230-Alpha-NAC protein (Fragment)2e-30At3g12390nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putativeO.I.H.G.S.X.
0.6483.4Os07g0622100At3g07230-Ribosomal protein s6 RPS6-25e-69At4g31700RPS6 (RIBOSOMAL PROTEIN S6)O.I.H.G.S.X.
0.6281.5Os09g0502000At3g07230-60S ribosomal protein L32A4e-26At5g4643060S ribosomal protein L32 (RPL32B)O.I.H.G.S.X.
0.6181.2Os01g0205500At3g07230-60S ribosomal protein L11-2 (L16). Splice isoform21e-109At4g18730RPL16BO.I.H.G.S.X.
0.6079.7Os05g0155100At3g07230-60S ribosomal protein L185e-4At2g4757060S ribosomal protein L18 (RPL18A)O.I.H.G.S.X.
0.6079.7Os06g0571400At3g07230-Elongation factor 1-gamma (EF-1-gamma) (eEF-1Bgamma)9e-44At1g57720elongation factor 1B-gamma, putative / eEF-1B gamma, putativeO.I.H.G.S.X.
0.6079.7Os03g0141000At3g07230-60S ribosomal protein L215e-21At1g0969060S ribosomal protein L21 (RPL21C)O.I.H.G.S.X.
0.6079.7Os02g0105900At3g07230-40S ribosomal protein S44e-125At5g5842040S ribosomal protein S4 (RPS4D)O.I.H.G.S.X.
0.5978.0Os07g0208000At3g07230-40S ribosomal protein S15a7e-49At1g07770RPS15A (ribosomal protein s15a)O.I.H.G.S.X.
0.5978.0Os01g0815800At3g07230--2e-31At3g53020STV1 (SHORT VALVE1)O.I.H.G.S.X.
0.5877.0Os04g0398900At3g07230-Hypothetical protein5e-25At3g61110ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)O.I.H.G.S.X.
0.5877.0Os07g0150200At3g07230-40S ribosomal protein S125e-19At2g3206040S ribosomal protein S12 (RPS12C)O.I.H.G.S.X.
0.5877.0Os05g0556900At3g07230-Ribosomal protein L35A2e-6At1g4188060S ribosomal protein L35a (RPL35aB)O.I.H.G.S.X.
0.5676.3Os08g0117200At3g07230-40S ribosomal protein S133e-29At3g6077040S ribosomal protein S13 (RPS13A)O.I.H.G.S.X.
0.5676.3Os04g0598200At3g07230-60S ribosomal protein L122e-21At3g5343060S ribosomal protein L12 (RPL12B)O.I.H.G.S.X.
0.5676.3Os01g0348700At3g07230-60S ribosomal protein L23a (L25)3e-51At2g39460RPL23AA (RIBOSOMAL PROTEIN L23AA)O.I.H.G.S.X.
0.5676.3Os09g0485900At3g07230-60S ribosomal protein L9 (Gibberellin-regulatedprotein GA)5e-23At1g33140PGY2 (PIGGYBACK2)O.I.H.G.S.X.
0.5573.7Os02g0699600At3g07230-60S ribosomal protein L121e-29At5g6067060S ribosomal protein L12 (RPL12C)O.I.H.G.S.X.
0.5371.3Os12g0167900At3g07230-60S ribosomal protein L31e-116At1g43170ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)O.I.H.G.S.X.
0.5269.6Os09g0568800At3g07230-40S ribosomal protein S253e-29At2g2158040S ribosomal protein S25 (RPS25B)O.I.H.G.S.X.
0.5269.6Os03g0343500At3g07230-60S ribosomal protein L22-22e-24At3g0556060S ribosomal protein L22-2 (RPL22B)O.I.H.G.S.X.
0.5269.6Os03g0577000At3g07230-40S ribosomal protein S38e-31At5g3553040S ribosomal protein S3 (RPS3C)O.I.H.G.S.X.
0.5168.7Os02g0591700At3g07230-Ribosomal protein L6 (Fragment)9e-6At1g7406060S ribosomal protein L6 (RPL6B)O.I.H.G.S.X.
0.5168.7Os02g0287000At3g07230-40S ribosomal protein S3a (CYC07 protein)4e-14At4g3467040S ribosomal protein S3A (RPS3aB)O.I.H.G.S.X.
0.5068.0Os03g0337800At3g07230-60S ribosomal protein L19 (Fragment)2e-43At1g02780emb2386 (embryo defective 2386)O.I.H.G.S.X.
0.5068.0Os12g0508300At3g07230-Conserved hypothetical protein2e-20At4g3386540S ribosomal protein S29 (RPS29C)O.I.H.G.S.X.
0.5068.0Os02g0814700At3g07230-60S ribosomal protein L17 [Oryza sativa (japonicacultivar-group)]4e-78At1g0448060S ribosomal protein L23 (RPL23A)O.I.H.G.S.X.
0.4964.4Os03g0424500At3g07230-40S ribosomal protein S195e-10At5g6117040S ribosomal protein S19 (RPS19C)O.I.H.G.S.X.
0.4660.9Os01g0834500At3g07230-40S ribosomal protein S231e-93At5g0296040S ribosomal protein S23 (RPS23B)O.I.H.G.S.X.
0.4660.9Os02g0797200At3g07230-60S ribosomal protein L396e-11At3g0219060S ribosomal protein L39 (RPL39B)O.I.H.G.S.X.
0.4660.9Os01g0752300At3g07230-60S ribosomal protein L18a-11e-87At2g3448060S ribosomal protein L18A (RPL18aB)O.I.H.G.S.X.
0.4355.4Os11g0615700At3g07230-Proteasome subunit alpha type 5 (EC 3.4.25.1) (20Sproteasome alpha subunit E) (20S proteasome subunitalpha-5)1e-51At3g14290PAE2O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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