CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig104_x_at

Gene name
Homology with Arabidopsis Similar to At3g07230: wound-responsive protein-related (HF=7e-2)

Module size 6 genes

NF 0.07

%ile 9.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 66.9 0.92 Contig104_x_at Contig104 - - 7e-2 At3g07230 wound-responsive protein-related O.I. H.G. S.X.
0.50 66.9 0.93 Contig23073_at Contig23073 - - 2e-1 At2g04622 unknown protein O.I. H.G. S.X.
0.27 32.1 0.93 Contig16086_at Contig16086 - - 6e-3 At4g39720 VQ motif-containing protein O.I. H.G. S.X.
0.07 5.8 0.93 Contig8592_at Contig8592 - - 7e-1 At3g17090 protein phosphatase 2C family protein / PP2C family protein O.I. H.G. S.X.
0.06 4.8 0.94 Contig8975_at Contig8975 - - 2e-23 At4g36080 FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family protein O.I. H.G. S.X.
0.03 2.6 0.92 Contig18843_at Contig18843 - - 3e-2 At4g31580 SRZ-22 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.7 97.7 GSM419979 Awn_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
5.7 97.7 GSM440970 Control awn_Rep2 GSE17669 Gene expression in the barley spike during drought stress
4.8 97.0 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1 96.2 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9 95.8 GSM372974 genotype: 11542 - pathogen isolates: 5874 - time: 0 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7 95.5 GSM261027 ABA-Late-rep1 GSE10328 ABA experiment
3.6 95.3 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
3.5 95.1 GSM419980 Awn_Rep3 GSE16754 Comparative transcriptional profiling of organs of the barley spike
3.5 95.1 GSM440971 Control awn_Rep3 GSE17669 Gene expression in the barley spike during drought stress
3.4 94.8 GSM372992 genotype: 11542 - pathogen isolates: K1 - time: 0 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g07230, orthologous to the query gene, Contig104_x_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.43 55.3 At3g07230 819912 wound-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.52 67.4 At1g48160 841235 signal recognition particle 19 kDa protein, putative / SRP19, putative F:7S RNA binding;P:protein targeting, SRP-dependent cotranslational protein targeting to membrane;C:signal recognition particle, signal recognition particle, endoplasmic reticulum targeting;MFAOP O.I. H.G. S.X.
0.47 61.2 At1g12830 837839 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. H.G. S.X.
0.44 57.2 At1g08780 837400 AIP3 (ABI3-INTERACTING PROTEIN 3) F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFOPA O.I. H.G. S.X.
0.39 48.4 At5g61310 836252 cytochrome c oxidase subunit Vc, putative / COX5C, putative F:cytochrome-c oxidase activity;P:unknown;C:mitochondrial respiratory chain, endomembrane system;P O.I. H.G. S.X.
0.39 48.4 At2g25670 817108 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. H.G. S.X.
0.37 45.0 At3g26360 822240 unknown protein F:unknown;P:unknown;C:unknown;PBO O.I. H.G. S.X.
0.35 41.6 At1g11240 837665 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MOFPBV O.I. H.G. S.X.
0.33 38.1 At5g48870 834945 SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) SAD1 encodes a polypeptide similar to multifunctional Sm-like snRNP proteins that are required for mRNA splicing, export, and degradation. Mutation in this gene increases plant sensitivity to drought stress and ABA in seed germination, root growth, and the expression of some stress-responsive genes. O.I. H.G. S.X.
0.32 35.7 At2g40765 818673 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, mitochondrial respiratory chain complex III;P O.I. H.G. S.X.
0.31 33.8 At1g08580 837380 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. H.G. S.X.
0.27 26.2 At1g07660 837279 histone H4 F:DNA binding;P:nucleosome assembly;C:plasma membrane, chloroplast;MOPFV O.I. H.G. S.X.
0.26 24.4 At4g08460 826405 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.18 11.4 At2g21290 816668 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. H.G. S.X.
0.17 10.2 At1g17130 838283 cell cycle control protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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