Co-expression analysis

Gene ID Contig10495_s_at
Gene name
Homology with ArabidopsisSimilar to At3g16190: isochorismatase hydrolase family protein (HF=4e-3)
Module size 6 genes
NF 0.22
%ile 26.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.94Contig10495_s_atContig10495--4e-3At3g16190isochorismatase hydrolase family proteinO.I.H.G.S.X.
0.2528.90.94Contig11605_atContig11605--4e-8At5g47310unknown proteinO.I.H.G.S.X.
0.2021.10.95Contig12544_s_atContig12544--2e+1At5g03100F-box family proteinO.I.H.G.S.X.
0.1615.30.94Contig13805_atContig13805--5e-1At2g40080ELF4 (EARLY FLOWERING 4)O.I.H.G.S.X.
0.1615.30.94EBma01_SQ005_G16_atEBma01_SQ005_G16--3e+0At2g01290ribose-5-phosphate isomeraseO.I.H.G.S.X.
0.1210.40.94Contig20306_atContig20306--2e-3At1g09160protein phosphatase 2C-related / PP2C-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.498.5GSM261068Albina f-17 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.598.2GSM398249Martin_0d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
6.498.1GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.097.9GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
5.797.7GSM398251Martin_0d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
5.697.7GSM261069Albina f-17 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.897.0GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
4.897.0GSM398250Martin_0d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.696.8GSM261043before 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.596.7GSM282032Malting_day1_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.134976.2.S1_at, orthologous to the query gene, Contig10495_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7192.6PtpAffx.134976.2.S1_atAt3g16190--4e+0At3g05570unknown proteinO.I.H.G.S.X.
0.2441.8PtpAffx.205782.1.S1_atAt3g16190hypothetical protein-2e-6At1g19640JMT (JASMONIC ACID CARBOXYL METHYLTRANSFERASE)O.I.H.G.S.X.
0.1219.6PtpAffx.101087.2.S1_atAt3g16190hypothetical protein-1e+0At2g11522unknown proteinO.I.H.G.S.X.
0.0812.9PtpAffx.37920.2.A1_atAt3g16190thioredoxin m-3e-2At3g56420-O.I.H.G.S.X.
0.058.3Ptp.1674.1.A1_s_atAt3g16190--2e-5At5g64940ATATH13O.I.H.G.S.X.
0.012.2PtpAffx.17675.1.A1_atAt3g16190--2e+1At5g66930unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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