Co-expression analysis

Gene ID	Contig10484_at
Gene name
Homology with Arabidopsis	Similar to At3g24650: ABI3 (ABA INSENSITIVE 3) (HF=6e-10)
Module size	6 genes
NF	0.59
%ile	81.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.92	Contig10484_at	Contig10484	-	-	6e-10	At3g24650	ABI3 (ABA INSENSITIVE 3)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.92	HV_CEb0001H12r2_at	HV_CEb0001H12r2	-	-	4e+0	At5g16740	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.92	Contig19483_at	Contig19483	-	-	8e-39	At1g07170	-	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.90	Contig13318_at	Contig13318	-	-	1e-2	At3g59010	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.92	Contig657_s_at	Contig657	-	-	1e-49	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.93	Contig23603_at	Contig23603	-	-	8e-2	At5g40870	AtUK/UPRT1 (Uridine kinase/Uracil phosphoribosyltransferase 1)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.5	99.5	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
13.5	99.5	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
8.3	98.8	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
8.3	98.8	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.3	98.5	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.7	98.3	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.5	98.2	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.5	98.2	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.6	97.7	GSM419974	Lemma_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.6	97.7	GSM440959	Control lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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