Co-expression analysis

Gene ID Contig10472_at
Gene name
Homology with ArabidopsisSimilar to At2g44840: ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) (HF=9e-3)
Module size 6 genes
NF 0.14
%ile 17.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4458.90.89Contig10472_atContig10472--9e-3At2g44840ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)O.I.H.G.S.X.
0.2528.90.90Contig7539_s_atContig7539--3e-13At4g07960ATCSLC12 (CELLULOSE-SYNTHASE LIKE C12)O.I.H.G.S.X.
0.2122.60.89Contig8996_s_atContig8996--3e-2At1g57560AtMYB50 (myb domain protein 50)O.I.H.G.S.X.
0.1412.90.89EBpi07_SQ001_A11_atEBpi07_SQ001_A11--4e+0At5g43850ARD4O.I.H.G.S.X.
0.119.40.89Contig5842_atContig5842--8e-6At3g12820AtMYB10 (myb domain protein 10)O.I.H.G.S.X.
0.075.80.90HU11F22u_s_atHU11F22u--4e+0At5g12320ankyrin repeat family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.199.6GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
12.199.3GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.498.1GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.897.8GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.797.7GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.097.2GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
4.496.6GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.296.3GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.895.7GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.203023.1.S1_x_at, orthologous to the query gene, Contig10472_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7694.3PtpAffx.203023.1.S1_x_atAt2g44840AP2/ERF domain-containing transcription factor-1e-22At5g13910LEP (LEAFY PETIOLE)O.I.H.G.S.X.
0.5380.5PtpAffx.17550.1.A1_atAt2g44840type-a response regulator-1e+0At3g57040ARR9 (RESPONSE REGULATOR 9)O.I.H.G.S.X.
0.3661.6PtpAffx.114670.1.A1_atAt2g44840--1e-6At1g60970clathrin adaptor complex small chain family proteinO.I.H.G.S.X.
0.3357.5PtpAffx.209023.1.S1_atAt2g44840hypothetical protein-3e-7At1g69060heat shock protein bindingO.I.H.G.S.X.
0.2950.5PtpAffx.160976.1.A1_atAt2g44840--5e-1At5g66510GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)O.I.H.G.S.X.
0.2136.5PtpAffx.205857.1.S1_atAt2g44840hypothetical protein-8e-5At3g17160unknown proteinO.I.H.G.S.X.
0.1626.9PtpAffx.108197.1.A1_atAt2g44840hypothetical protein-3e-1At1g7427060S ribosomal protein L35a (RPL35aC)O.I.H.G.S.X.
0.0711.6PtpAffx.33230.2.S1_atAt2g44840--8e-1At3g08890unknown proteinO.I.H.G.S.X.
0.069.8Ptp.2578.1.S1_atAt2g44840MADS9, AGL24 mads-box transcription factor-2e-28At4g24540AGL24 (AGAMOUS-LIKE 24)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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