Co-expression analysis

Gene ID Contig10472_at
Gene name
Homology with ArabidopsisSimilar to At2g44840: ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) (HF=9e-3)
Module size 6 genes
NF 0.14
%ile 17.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4458.90.89Contig10472_atContig10472--9e-3At2g44840ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)O.I.H.G.S.X.
0.2528.90.90Contig7539_s_atContig7539--3e-13At4g07960ATCSLC12 (CELLULOSE-SYNTHASE LIKE C12)O.I.H.G.S.X.
0.2122.60.89Contig8996_s_atContig8996--3e-2At1g57560AtMYB50 (myb domain protein 50)O.I.H.G.S.X.
0.1412.90.89EBpi07_SQ001_A11_atEBpi07_SQ001_A11--4e+0At5g43850ARD4O.I.H.G.S.X.
0.119.40.89Contig5842_atContig5842--8e-6At3g12820AtMYB10 (myb domain protein 10)O.I.H.G.S.X.
0.075.80.90HU11F22u_s_atHU11F22u--4e+0At5g12320ankyrin repeat family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.199.6GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
12.199.3GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.498.1GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.897.8GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.797.7GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.097.2GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
4.496.6GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.296.3GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.895.7GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os02g0654700, orthologous to the query gene, Contig10472_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8496.0Os02g0654700At2g44840-Ethylene-responsive element binding protein3e-3At5g47220ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)O.I.H.G.S.X.
0.5573.7Os03g0764100At2g44840-Conserved hypothetical protein6e-1At2g44840ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)O.I.H.G.S.X.
0.5573.7Os04g0667600At2g44840-Heavy metal transport/detoxification proteindomain containing protein2e+0At1g15860-O.I.H.G.S.X.
0.4964.4Os01g0570800At2g44840-IQ calmodulin-binding region domain containingprotein8e-14At4g33050EDA39 (embryo sac development arrest 39)O.I.H.G.S.X.
0.4863.7Os06g0683400At2g44840-EF-hand Ca2+-binding protein CCD11e+0At5g28630glycine-rich proteinO.I.H.G.S.X.
0.4558.8Os05g0343400At2g44840-WRKY transcription factor 53 (Transcription factorWRKY12)3e-7At5g07100WRKY26O.I.H.G.S.X.
0.4253.9Os04g0517100At2g44840-Myb protein1e-5At3g12820AtMYB10 (myb domain protein 10)O.I.H.G.S.X.
0.4152.4Os03g0787000At2g44840-Syntaxin1e-2At5g61270PIF7 (PHYTOCHROME-INTERACTING FACTOR7)O.I.H.G.S.X.
0.4051.1Os01g0667900At2g44840-Glutaredoxin domain containing protein2e+0At4g38140zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3948.3Os01g0934100At2g44840-C2 domain containing protein7e-1At5g62720integral membrane HPP family proteinO.I.H.G.S.X.
0.3948.3Os03g0180900At2g44840-ZIM domain containing protein1e-1At3g22275unknown proteinO.I.H.G.S.X.
0.3948.3Os03g0285800At2g44840-MAP kinase 1 (MAP kinase MAPK5a)8e-4At2g43790ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)O.I.H.G.S.X.
0.3846.9Os04g0619400At2g44840-Protein kinase domain containing protein9e-7At1g16670protein kinase family proteinO.I.H.G.S.X.
0.3541.7Os11g0195500At2g44840-Lipase, class 3 family protein3e-1At1g31300-O.I.H.G.S.X.
0.3440.0Os10g0392400At2g44840-ZIM domain containing protein5e-1At5g56320ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14)O.I.H.G.S.X.
0.3440.0Os03g0815100At2g44840-OsNAC6 protein7e-4At1g01720ATAF1O.I.H.G.S.X.
0.3440.0Os02g0743200At2g44840-Hypothetical protein7e-3At3g48020-O.I.H.G.S.X.
0.3338.8Os09g0486500At2g44840-Multiple stress-responsive zinc-finger protein(Multiple stress- associated zinc-finger protein)2e+0At5g24290integral membrane family proteinO.I.H.G.S.X.
0.3134.5Os02g0314600At2g44840-Peptidase A1, pepsin family protein1e+0At5g55570unknown proteinO.I.H.G.S.X.
0.3032.7Os04g0492400At2g44840-Conserved hypothetical protein3e-10At2g43320unknown proteinO.I.H.G.S.X.
0.2831.1Os05g0128200At2g44840-Transposable element Mu1 sequence3e-6At5g07500PEI1O.I.H.G.S.X.
0.127.2Os04g0584600At2g44840-Calcium dependent protein kinase3e-44At2g17290CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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