CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig10453_at

Gene name
Homology with Arabidopsis Similar to At5g19485: transferase (HF=9e-1)

Module size 6 genes

NF 0.77

%ile 95.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.92 Contig10453_at Contig10453 - - 9e-1 At5g19485 transferase O.I. H.G. S.X.
0.77 90.8 0.89 Contig5969_at Contig5969 - - 7e-4 At1g64970 G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE) O.I. H.G. S.X.
0.67 84.7 0.90 Contig4324_at Contig4324 - - 8e+0 At4g26060 unknown protein O.I. H.G. S.X.
0.67 84.7 0.92 Contig13318_at Contig13318 - - 1e-2 At3g59010 pectinesterase family protein O.I. H.G. S.X.
0.60 77.3 0.91 Contig5966_at Contig5966 - - 9e-2 At4g33360 terpene cyclase/mutase-related O.I. H.G. S.X.
0.50 66.9 0.92 Contig11946_at Contig11946 - - 2e+0 At1g49950 DNA-binding protein, putative O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.92	Contig10453_at	Contig10453	-	-	9e-1	At5g19485	transferase	O.I.	H.G.	S.X.
0.77	90.8	0.89	Contig5969_at	Contig5969	-	-	7e-4	At1g64970	G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)	O.I.	H.G.	S.X.
0.67	84.7	0.90	Contig4324_at	Contig4324	-	-	8e+0	At4g26060	unknown protein	O.I.	H.G.	S.X.
0.67	84.7	0.92	Contig13318_at	Contig13318	-	-	1e-2	At3g59010	pectinesterase family protein	O.I.	H.G.	S.X.
0.60	77.3	0.91	Contig5966_at	Contig5966	-	-	9e-2	At4g33360	terpene cyclase/mutase-related	O.I.	H.G.	S.X.
0.50	66.9	0.92	Contig11946_at	Contig11946	-	-	2e+0	At1g49950	DNA-binding protein, putative	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.83	HE01D12u_at	HE01D12u	-	-	9e+0	At5g41640	unknown protein	O.I.	H.G.	S.X.
0.77	90.8	0.87	Contig4324_s_at	Contig4324	-	-	8e+0	At4g26060	unknown protein	O.I.	H.G.	S.X.
0.75	89.5	0.69	Contig14905_s_at	Contig14905	-	-	1e-4	At1g15730	PRLI-interacting factor L, putative	O.I.	H.G.	S.X.
0.61	78.7	0.83	Contig9648_s_at	Contig9648	-	-	2e+0	At5g37478	-	O.I.	H.G.	S.X.
0.55	72.0	0.84	Contig3552_at	Contig3552	-	-	7e-1	At4g29273	LCR23 (Low-molecular-weight cysteine-rich 23)	O.I.	H.G.	S.X.
0.50	66.9	0.82	Contig15600_at	Contig15600	-	-	2e+0	At4g20760	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.
0.50	66.9	0.89	Contig5809_at	Contig5809	-	-	2e-14	At1g58440	XF1	O.I.	H.G.	S.X.
0.50	66.9	0.91	Contig5763_s_at	Contig5763	C-8,7-sterol isomerase	-	2e+0	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	O.I.	H.G.	S.X.
0.50	66.9	0.91	Contig5490_at	Contig5490	-	-	3e-1	At3g14680	CYP72A14	O.I.	H.G.	S.X.
0.47	62.2	0.89	Contig2772_s_at	Contig2772	-	-	4e-50	At5g49910	CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2)	O.I.	H.G.	S.X.
0.43	56.4	0.90	Contig10484_at	Contig10484	-	-	6e-10	At3g24650	ABI3 (ABA INSENSITIVE 3)	O.I.	H.G.	S.X.
0.42	55.2	0.75	Contig12945_at	Contig12945	-	-	8e-17	At5g50400	PAP27 (PURPLE ACID PHOSPHATASE 27)	O.I.	H.G.	S.X.
0.40	53.1	0.80	Contig19684_at	Contig19684	-	-	3e-1	At4g26730	methyltransferase	O.I.	H.G.	S.X.
0.40	53.1	0.88	Contig4445_at	Contig4445	-	-	3e-1	At2g32190	unknown protein	O.I.	H.G.	S.X.
0.40	53.1	0.91	EBpi01_SQ002_O15_at	EBpi01_SQ002_O15	-	-	2e+0	At5g47130	Bax inhibitor-1 family / BI-1 family	O.I.	H.G.	S.X.
0.38	49.5	0.71	Contig8898_at	Contig8898	-	-	2e-29	At2g25570	binding	O.I.	H.G.	S.X.
0.38	49.5	0.87	Contig17953_at	Contig17953	-	-	2e+0	At3g47100	unknown protein	O.I.	H.G.	S.X.
0.38	49.5	0.81	Contig3271_s_at	Contig3271	-	-	1e-6	At5g38660	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	O.I.	H.G.	S.X.
0.36	47.1	0.80	S0001000056F16F1_at	S0001000056F16F1	-	-	4e+0	At5g16050	GRF5 (GENERAL REGULATORY FACTOR 5)	O.I.	H.G.	S.X.
0.34	43.6	0.83	HVSMEg0009E19r2_s_at	HVSMEg0009E19r2	-	-	1e+1	At5g05000	TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34)	O.I.	H.G.	S.X.
0.33	42.6	0.76	Contig6208_at	Contig6208	-	-	2e-10	At4g12110	SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1)	O.I.	H.G.	S.X.
0.32	40.3	0.78	Contig3554_at	Contig3554	-	-	6e-13	At3g48890	ATMP2	O.I.	H.G.	S.X.
0.32	40.3	0.87	Contig5531_at	Contig5531	-	-	6e-8	At3g45640	ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3)	O.I.	H.G.	S.X.
0.31	38.6	0.87	Contig23678_at	Contig23678	-	-	5e-1	At3g12750	ZIP1 (ZINC TRANSPORTER 1 PRECURSOR)	O.I.	H.G.	S.X.
0.31	38.6	0.89	Contig5666_at	Contig5666	-	-	2e-6	At3g29100	VTI13	O.I.	H.G.	S.X.
0.30	37.0	0.80	EBro07_SQ002_B11_at	EBro07_SQ002_B11	-	-	3e+0	At3g56380	ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17)	O.I.	H.G.	S.X.
0.28	35.5	0.80	Contig2769_s_at	Contig2769	-	-	2e+0	At1g72610	GER1 (GERMIN-LIKE PROTEIN 1)	O.I.	H.G.	S.X.
0.28	35.5	0.82	Contig11003_s_at	Contig11003	-	-	1e+0	At4g36410	UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)	O.I.	H.G.	S.X.
0.27	32.1	0.84	Contig19118_at	Contig19118	-	-	7e-6	At5g50180	protein kinase, putative	O.I.	H.G.	S.X.
0.27	32.1	0.84	Contig11254_at	Contig11254	-	-	3e+0	At5g63085	-	O.I.	H.G.	S.X.
0.26	30.4	0.86	Contig1343_at	Contig1343	-	-	2e-40	At2g01250	60S ribosomal protein L7 (RPL7B)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.3 96.4 GSM261023 ABA-Control-rep3 GSE10328 ABA experiment
4.1 96.2 GSM68889 3 h control replicate 1 GSE3097 Barley1 salinity stress study
4.1 96.2 GSM261026 ABA-Early-rep3 GSE10328 ABA experiment
3.8 95.7 GSM146369 Golden Promise shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.7 95.5 GSM261021 ABA-Control-rep1 GSE10328 ABA experiment
3.6 95.3 GSM261022 ABA-Control-rep2 GSE10328 ABA experiment
3.6 95.3 GSM68891 3 h control replicate 3 GSE3097 Barley1 salinity stress study
3.5 95.1 GSM238436 Embryo 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.3 94.6 GSM261025 ABA-Early-rep2 GSE10328 ABA experiment
3.1 94.1 GSM281747 Genotype: Steptoe - rep3 GSE11182 Steptoe x Morex seedling leaf comparison

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
4.3	96.4	GSM261023	ABA-Control-rep3	GSE10328	ABA experiment
4.1	96.2	GSM68889	3 h control replicate 1	GSE3097	Barley1 salinity stress study
4.1	96.2	GSM261026	ABA-Early-rep3	GSE10328	ABA experiment
3.8	95.7	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.7	95.5	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
3.6	95.3	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.6	95.3	GSM68891	3 h control replicate 3	GSE3097	Barley1 salinity stress study
3.5	95.1	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment
3.1	94.1	GSM281747	Genotype: Steptoe - rep3	GSE11182	Steptoe x Morex seedling leaf comparison

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Contig10453_at
Gene name
Homology with Arabidopsis	Similar to At5g19485: transferase (HF=9e-1)
Module size	6 genes
NF	0.77
%ile	95.3

Co-expression analysis

Gene ID Contig10453_at Gene name Homology with ArabidopsisSimilar to At5g19485: transferase (HF=9e-1) Module size 6 genes NF 0.77 %ile 95.3

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig10453_at

Gene name
Homology with Arabidopsis Similar to At5g19485: transferase (HF=9e-1)

Module size 6 genes

NF 0.77

%ile 95.3

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays