Co-expression analysis

Gene ID Contig10453_at
Gene name
Homology with ArabidopsisSimilar to At5g19485: transferase (HF=9e-1)
Module size 6 genes
NF 0.77
%ile 95.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.92Contig10453_atContig10453--9e-1At5g19485transferaseO.I.H.G.S.X.
0.7790.80.89Contig5969_atContig5969--7e-4At1g64970G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)O.I.H.G.S.X.
0.6784.70.90Contig4324_atContig4324--8e+0At4g26060unknown proteinO.I.H.G.S.X.
0.6784.70.92Contig13318_atContig13318--1e-2At3g59010pectinesterase family proteinO.I.H.G.S.X.
0.6077.30.91Contig5966_atContig5966--9e-2At4g33360terpene cyclase/mutase-relatedO.I.H.G.S.X.
0.5066.90.92Contig11946_atContig11946--2e+0At1g49950DNA-binding protein, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.396.4GSM261023ABA-Control-rep3GSE10328ABA experimentLink to GEO
4.196.2GSM688893 h control replicate 1GSE3097Barley1 salinity stress studyLink to GEO
4.196.2GSM261026ABA-Early-rep3GSE10328ABA experimentLink to GEO
3.895.7GSM146369Golden Promise shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.795.5GSM261021ABA-Control-rep1GSE10328ABA experimentLink to GEO
3.695.3GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
3.695.3GSM688913 h control replicate 3GSE3097Barley1 salinity stress studyLink to GEO
3.595.1GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM261025ABA-Early-rep2GSE10328ABA experimentLink to GEO
3.194.1GSM281747Genotype: Steptoe - rep3GSE11182Steptoe x Morex seedling leaf comparisonLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.109854.1.S1_at, orthologous to the query gene, Contig10453_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.2TaAffx.109854.1.S1_atAt5g19485--4e+0At4g29850unknown proteinO.I.H.G.S.X.
0.9198.2TaAffx.7028.1.S1_atAt5g19485--9e-1At5g46660CHP-rich zinc finger protein, putativeO.I.H.G.S.X.
0.8393.4TaAffx.53115.1.S1_atAt5g19485--3e-1At2g45630oxidoreductase family proteinO.I.H.G.S.X.
0.8092.2Ta.15129.1.S1_atAt5g19485--5e+0At4g13590unknown proteinO.I.H.G.S.X.
0.6182.0TaAffx.52968.1.S1_atAt5g19485--1e+0At3g57440unknown proteinO.I.H.G.S.X.
0.6081.0TaAffx.7177.1.S1_x_atAt5g19485--5e-4At3g47000glycosyl hydrolase family 3 proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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