Co-expression analysis

Gene ID	Contig10453_at
Gene name
Homology with Arabidopsis	Similar to At5g19485: transferase (HF=9e-1)
Module size	6 genes
NF	0.77
%ile	95.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.92	Contig10453_at	Contig10453	-	-	9e-1	At5g19485	transferase	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.89	Contig5969_at	Contig5969	-	-	7e-4	At1g64970	G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.90	Contig4324_at	Contig4324	-	-	8e+0	At4g26060	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.92	Contig13318_at	Contig13318	-	-	1e-2	At3g59010	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.91	Contig5966_at	Contig5966	-	-	9e-2	At4g33360	terpene cyclase/mutase-related	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.92	Contig11946_at	Contig11946	-	-	2e+0	At1g49950	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	96.4	GSM261023	ABA-Control-rep3	GSE10328	ABA experiment
4.1	96.2	GSM68889	3 h control replicate 1	GSE3097	Barley1 salinity stress study
4.1	96.2	GSM261026	ABA-Early-rep3	GSE10328	ABA experiment
3.8	95.7	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.7	95.5	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
3.6	95.3	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.6	95.3	GSM68891	3 h control replicate 3	GSE3097	Barley1 salinity stress study
3.5	95.1	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment
3.1	94.1	GSM281747	Genotype: Steptoe - rep3	GSE11182	Steptoe x Morex seedling leaf comparison

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.7073.2.S1_at, orthologous to the query gene, Contig10453_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	Ptp.7073.2.S1_at	At5g19485	hypothetical protein	-	8e-2	At1g68300	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.207433.1.S1_at	At5g19485	1-aminocyclopropane-1-carboxylate	-	1e-30	At3g49700	ACS9 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.219046.1.S1_at	At5g19485	cytochrome P450	-	9e-2	At5g60530	late embryogenesis abundant protein-related / LEA protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.201560.1.S1_at	At5g19485	hypothetical protein	-	8e-1	At5g49990	xanthine/uracil permease family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.60325.1.S1_at	At5g19485	hypothetical protein	-	1e+0	At5g41720	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.206437.1.S1_at	At5g19485	calcium dependent protein kinase 26	-	6e-42	At5g04870	CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.29098.1.S1_at	At5g19485	-	-	2e+0	At3g19920	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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