CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig10453_at

Gene name
Homology with Arabidopsis Similar to At5g19485: transferase (HF=9e-1)

Module size 6 genes

NF 0.77

%ile 95.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.92 Contig10453_at Contig10453 - - 9e-1 At5g19485 transferase O.I. H.G. S.X.
0.77 90.8 0.89 Contig5969_at Contig5969 - - 7e-4 At1g64970 G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE) O.I. H.G. S.X.
0.67 84.7 0.90 Contig4324_at Contig4324 - - 8e+0 At4g26060 unknown protein O.I. H.G. S.X.
0.67 84.7 0.92 Contig13318_at Contig13318 - - 1e-2 At3g59010 pectinesterase family protein O.I. H.G. S.X.
0.60 77.3 0.91 Contig5966_at Contig5966 - - 9e-2 At4g33360 terpene cyclase/mutase-related O.I. H.G. S.X.
0.50 66.9 0.92 Contig11946_at Contig11946 - - 2e+0 At1g49950 DNA-binding protein, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.3 96.4 GSM261023 ABA-Control-rep3 GSE10328 ABA experiment
4.1 96.2 GSM68889 3 h control replicate 1 GSE3097 Barley1 salinity stress study
4.1 96.2 GSM261026 ABA-Early-rep3 GSE10328 ABA experiment
3.8 95.7 GSM146369 Golden Promise shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.7 95.5 GSM261021 ABA-Control-rep1 GSE10328 ABA experiment
3.6 95.3 GSM261022 ABA-Control-rep2 GSE10328 ABA experiment
3.6 95.3 GSM68891 3 h control replicate 3 GSE3097 Barley1 salinity stress study
3.5 95.1 GSM238436 Embryo 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.3 94.6 GSM261025 ABA-Early-rep2 GSE10328 ABA experiment
3.1 94.1 GSM281747 Genotype: Steptoe - rep3 GSE11182 Steptoe x Morex seedling leaf comparison

Inter-species module comparison

A co-expression module including the rice gene, Os02g0121700, orthologous to the query gene, Contig10453_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.70 88.4 Os02g0121700 At5g19485 - Terpene synthase-like domain containing protein 2e-2 At1g61680 TPS14 (TERPENE SYNTHASE 14) O.I. H.G. S.X.
0.31 34.5 Os05g0540900 At5g19485 - - 4e-2 At1g04445 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.31 34.5 Os02g0733900 At5g19485 - Conserved hypothetical protein 5e+0 At5g20181 unknown protein O.I. H.G. S.X.
0.30 32.7 Os01g0597600 At5g19485 - Amino acid/polyamine transporter II family protein 5e+0 At2g35480 unknown protein O.I. H.G. S.X.
0.27 27.5 Os08g0509100 At5g19485 - Lipoxygenase, chloroplast precursor (EC1.13.11.12) 6e+0 At4g14723 - O.I. H.G. S.X.
0.26 25.6 Os08g0232700 At5g19485 - Exo70 exocyst complex subunit family protein 2e-2 At5g41430 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.25 24.1 Os02g0460200 At5g19485 - Conserved hypothetical protein 2e-3 At4g31380 FLP1 (FPF1-LIKE PROTEIN 1) O.I. H.G. S.X.
0.23 21.2 Os02g0527200 At5g19485 - Conserved hypothetical protein 5e-1 At1g07950 surfeit locus protein 5 family protein / SURF5 family protein O.I. H.G. S.X.
0.23 21.2 Os02g0677300 At5g19485 - CRT/DRE binding factor 1 4e-2 At1g15360 SHN1 (SHINE 1) O.I. H.G. S.X.
0.22 19.4 Os06g0666400 At5g19485 - VQ domain containing protein 6e+0 At4g15120 VQ motif-containing protein O.I. H.G. S.X.
0.20 16.5 Os03g0799300 At5g19485 - Conserved hypothetical protein 5e+0 At4g24930 thylakoid lumenal 17.9 kDa protein, chloroplast O.I. H.G. S.X.
0.20 16.5 Os07g0114000 At5g19485 - Protein phosphatase 2C-like 2e-1 At2g40380 PRA1.B2 (PRENYLATED RAB ACCEPTOR 1.B2) O.I. H.G. S.X.
0.19 15.1 Os02g0559800 At5g19485 - Zn-finger, RING domain containing protein 6e-1 At4g24026 unknown protein O.I. H.G. S.X.
0.13 8.2 Os04g0497000 At5g19485 - (+)-pulegone reductase 5e-5 At3g03080 NADP-dependent oxidoreductase, putative O.I. H.G. S.X.
0.12 7.2 Os01g0821600 At5g19485 - DNA-binding WRKY domain containing protein 2e-1 At4g09460 ATMYB6 O.I. H.G. S.X.
0.11 6.5 Os09g0452900 At5g19485 - Glycosyl transferase, family 31 protein 6e-14 At1g05170 galactosyltransferase family protein O.I. H.G. S.X.
0.11 6.5 Os04g0395800 At5g19485 - ZIM domain containing protein 2e-3 At5g11930 glutaredoxin family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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