Co-expression analysis

Gene ID Contig10453_at
Gene name
Homology with ArabidopsisSimilar to At5g19485: transferase (HF=9e-1)
Module size 6 genes
NF 0.77
%ile 95.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.92Contig10453_atContig10453--9e-1At5g19485transferaseO.I.H.G.S.X.
0.7790.80.89Contig5969_atContig5969--7e-4At1g64970G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)O.I.H.G.S.X.
0.6784.70.90Contig4324_atContig4324--8e+0At4g26060unknown proteinO.I.H.G.S.X.
0.6784.70.92Contig13318_atContig13318--1e-2At3g59010pectinesterase family proteinO.I.H.G.S.X.
0.6077.30.91Contig5966_atContig5966--9e-2At4g33360terpene cyclase/mutase-relatedO.I.H.G.S.X.
0.5066.90.92Contig11946_atContig11946--2e+0At1g49950DNA-binding protein, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.396.4GSM261023ABA-Control-rep3GSE10328ABA experimentLink to GEO
4.196.2GSM688893 h control replicate 1GSE3097Barley1 salinity stress studyLink to GEO
4.196.2GSM261026ABA-Early-rep3GSE10328ABA experimentLink to GEO
3.895.7GSM146369Golden Promise shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.795.5GSM261021ABA-Control-rep1GSE10328ABA experimentLink to GEO
3.695.3GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
3.695.3GSM688913 h control replicate 3GSE3097Barley1 salinity stress studyLink to GEO
3.595.1GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM261025ABA-Early-rep2GSE10328ABA experimentLink to GEO
3.194.1GSM281747Genotype: Steptoe - rep3GSE11182Steptoe x Morex seedling leaf comparisonLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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