Co-expression analysis

Gene ID Contig10431_at
Gene name
Homology with ArabidopsisSimilar to At3g11530: vacuolar protein sorting 55 family protein / VPS55 family protein (HF=1e+0)
Module size 6 genes
NF 0.29
%ile 37.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6380.30.93Contig10431_atContig10431--1e+0At3g11530vacuolar protein sorting 55 family protein / VPS55 family proteinO.I.H.G.S.X.
0.3747.90.94Contig5913_s_atContig5913--4e+0At4g21780unknown proteinO.I.H.G.S.X.
0.2935.50.95HX08J20r_s_atHX08J20r--2e+0At4g15920-O.I.H.G.S.X.
0.2528.90.95Contig7030_atContig7030--9e-1At1g15740leucine-rich repeat family proteinO.I.H.G.S.X.
0.2021.10.95Contig10110_s_atContig10110--4e-4At4g29870-O.I.H.G.S.X.
0.1412.90.94Contig6761_atContig6761--6e-11At3g43790ZIFL2 (ZINC INDUCED FACILITATOR-like 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.498.1GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.997.9GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.097.2GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM419976Palea_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.496.6GSM440964Control palea_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.196.2GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.196.2GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM261043before 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.096.0GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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