Co-expression analysis

Gene ID	Contig10431_at
Gene name
Homology with Arabidopsis	Similar to At3g11530: vacuolar protein sorting 55 family protein / VPS55 family protein (HF=1e+0)
Module size	6 genes
NF	0.29
%ile	37.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.93	Contig10431_at	Contig10431	-	-	1e+0	At3g11530	vacuolar protein sorting 55 family protein / VPS55 family protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.94	Contig5913_s_at	Contig5913	-	-	4e+0	At4g21780	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	HX08J20r_s_at	HX08J20r	-	-	2e+0	At4g15920	-	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	Contig7030_at	Contig7030	-	-	9e-1	At1g15740	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig10110_s_at	Contig10110	-	-	4e-4	At4g29870	-	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.94	Contig6761_at	Contig6761	-	-	6e-11	At3g43790	ZIFL2 (ZINC INDUCED FACILITATOR-like 2)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	98.1	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.4	96.6	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1	96.2	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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