Co-expression analysis

Gene ID	Contig10400_s_at
Gene name
Homology with Arabidopsis	Similar to At1g26850: dehydration-responsive family protein (HF=4e-5)
Module size	6 genes
NF	0.34
%ile	46.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	74.9	0.95	Contig10400_s_at	Contig10400	-	-	4e-5	At1g26850	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig25404_at	Contig25404	-	-	3e-1	At1g32880	importin alpha-1 subunit, putative	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig10313_at	Contig10313	-	-	1e-18	At4g34830	-	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	Contig9702_at	Contig9702	-	-	2e-8	At1g54130	RSH3 (RELA/SPOT HOMOLOG 3)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.96	Contig19458_at	Contig19458	-	-	2e+0	At4g29100	ethylene-responsive family protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.96	Contig24399_at	Contig24399	-	-	1e+0	At3g22940	F-box family protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.8	97.8	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.0	96.0	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.8	95.7	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.7	95.5	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.7	95.5	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.7	95.5	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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